Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2857 ATGAACAATATAGGTAGATATCCACCTGGGATCGGCGTTGGCCGAGGGGGAGGTGTGAACTCGAATCCTGCGTTTCAGCCGCGACCTCCTCAGCAACAGTACGTGCAGAGGTATATGGTGCAAAATcaacagcagcagcagcagttacaacaacaacaatggcTTAGAAGAACGCAGCTGGGCGGTACTGATTCCAGCGTGGTTGACGAGGTCGAGAAGACTGTACAGTCTGAAGCCGTTGATCCAAGGTCAACACTACAGTTTATCCAACTTTACTTTATGCGAAGTAGCAACACTAGgggttctattttttttttctgtctggTTGCATGCAAGGTATTTGAAGTTTTGATGGTTCTGAAATGGCCATTGATTTGCAAATTTAAGCAACAAGTTATTGATTGGTGTTTCTTGGAGATTGCCTCCTCCTTTTGTCCAGTCACCAGTTCACAAGATTGGAAGGCAAGACTGAAGATACCCCCACCTGATACACGCTATAAGACAGAGGATGCGACAGCAACCAAAGGAAATGAATTTGAAGATAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATTCCTATTGCTCTTACTTGTAGTGACATTCTAGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCTTTTTGCATTCCTGCATTGGAAAAGATTGATCAGGATAACAATACTATTCAAGTTTATGGACCCAAAGTTGGAACTAGGAAGAATGAAAATCCTGAAAAAGCTTCCATTGAAGTTATATGGAAGCCTAAGACAGGACTCATTGGAAAATTGGAAAAGGAGTCAGAGATGATATTAAAGAAAACTCTAGAAAGCATTTGCATTCGAAGCATATATCCAAATACCACAACTTCAATTATAATCCAGGTTGTTTATGATGATGGTGCTCTTCTTCCATGTGTGATAAATGCAGCATGTGCTGCCCTTGTGGATGCAGGAATTCCCCTGAAACATCTCGCTGTTGCAATATGTTGTTGTGTAGCAAATAGTGGTTATGTTCTACTAGACCCCAATAAACTTGAAGAGGAGGTGGGTAGTGAACCCATGGAACATGGAATCATTACATCTGTTACCCAGGGTGCAATGTCAGTGGATGATTATCTCCTCTGCCTAGAACGAGGGCGTGCTGCCAGTGCAAGAATGTCTGAATTTTTGAGGAAGAGCTTGCAGCCACAGTTATCAAGTGACTCATCTAAAGCTGGGGAAACCACCTTCTGCACCCTTTTGAAAACTAATCAGATTGAGATGTGCTTTACTGTGGTTAGATATTGGTGCGAGCATTCAAAAGTTGGGTATGTTATGTCATCTACACAACAATCTGAATTGTTGCATTCTCTTGGTGGTGCATTCTTTCCTTTGATTCTTTTACTGGAGTGTCTTTCAGTTTCACAATATAAGTGGCTTGTTAATATAAGAACGGCCAATAGAGAAATGGGTGCTTTTGAGGGACTAATGCCATACTCCTATCGTGCTTCACGCTTCCATCTTACCTATATTTTAATTGTCAAACGAGAAATGAGTTCCGACAGTTGCTCTCCGCTTGAAAAAAACCAAAACCATCCTAACCATTCTTCTCCGTTAAACATCCCACCACCATCTCAAAATGCCTCTCTCGTCTCAAAACACCAAAAATCATACAAAGATGCACTAGCCGGAAACTCCCACTGGCCTCCCTCGGCGACTGGAAACAGTAACGGGCAAACTGGCGCCTAA 1770 0.4102 MNNIGRYPPGIGVGRGGGVNSNPAFQPRPPQQQYVQRYMVQNQQQQQQLQQQQWLRRTQLGGTDSSVVDEVEKTVQSEAVDPRSTLQFIQLYFMRSSNTRGSIFFFCLVACKVFEVLMVLKWPLICKFKQQVIDWCFLEIASSFCPVTSSQDWKARLKIPPPDTRYKTEDATATKGNEFEDKRELLMGIYEKGFERPSPIQEESIPIALTCSDILARAKNGTGKTAAFCIPALEKIDQDNNTIQVYGPKVGTRKNENPEKASIEVIWKPKTGLIGKLEKESEMILKKTLESICIRSIYPNTTTSIIIQVVYDDGALLPCVINAACAALVDAGIPLKHLAVAICCCVANSGYVLLDPNKLEEEVGSEPMEHGIITSVTQGAMSVDDYLLCLERGRAASARMSEFLRKSLQPQLSSDSSKAGETTFCTLLKTNQIEMCFTVVRYWCEHSKVGYVMSSTQQSELLHSLGGAFFPLILLLECLSVSQYKWLVNIRTANREMGAFEGLMPYSYRASRFHLTYILIVKREMSSDSCSPLEKNQNHPNHSSPLNIPPPSQNASLVSKHQKSYKDALAGNSHWPPSATGNSNGQTGA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2857 589 SUPERFAMILY Ribosomal protein S5 domain 2-like 244 333 IPR020568 -
Sto2g2857 589 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 86 - -
Sto2g2857 589 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 148 245 - -
Sto2g2857 589 Gene3D - 242 421 IPR027408 -
Sto2g2857 589 MobiDBLite consensus disorder prediction 530 561 - -
Sto2g2857 589 Pfam DEAD/DEAH box helicase 199 244 IPR011545 GO:0003676|GO:0005524
Sto2g2857 589 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6-RELATED 148 245 - -
Sto2g2857 589 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6-RELATED 4 86 - -
Sto2g2857 589 SUPERFAMILY Ribonuclease PH domain 2-like 334 411 IPR036345 -
Sto2g2857 589 MobiDBLite consensus disorder prediction 530 589 - -
Sto2g2857 589 MobiDBLite consensus disorder prediction 1 26 - -
Sto2g2857 589 CDD RNase_PH_RRP46 245 405 - -
Sto2g2857 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 242 IPR027417 -
Sto2g2857 589 MobiDBLite consensus disorder prediction 575 589 - -
Sto2g2857 589 Pfam 3' exoribonuclease family, domain 1 245 334 IPR001247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2857 Sto-Chr2 41982166 41990812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2857 162 237 Eukaryotic Initiation Factors Gene Family AT5G11200 37.647 2.71e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2857 K12590 - jre:109009696 280.796