Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2826 ATGGAGGAGGAGGAAGTTAGCTTTGTGCAAGAGTGGGAGTTGAATAATATTATGAATGCATATGAATATCCTACTTTATTGCCAATAGAAGCAGCAGGTTTTGGAGACACATTATTACACCACCACCATAATAATTATTCATTCATCCCCGGCGGCCACATTAATTATACCTCAAACCCAAACATGATGATCCCCAAAACTAGTAGTATTGAAGAAAGACCCAGAAAGGTCATGAAAAGCAGCACTAATACTATTAGTGATCAGATCACATCATCCCATTCCAACCTAAGTGAGGTTGATGTGTCCTTTGTGATGGAGCAAATGGGATTTTGCAAGAAGCACTCTTGTGATCTGTGTGGAAGCAATAATATGAATAATGTTGGAGCTGATGTTTCCATGTGTGGTGGTGATGATGAGGAATGGAAGCGAAGGGAGAAGCTGAGTCAGAGGTTCATTGCTCTCTCTGCTCTTGTTCCTGGCCTCAAGAAGATGGACAAAGCATCAGTTCTTGGGGATGCTATAAAGTACTTGAAGCAACTGCAAGAGAAAGTGAAGAGTcttgaggaagaagaagcaaaggggAAAAGAAAGGAATGTGTGGATTTGAAGGAAGCGATTGtgaagggattagggtttgcagCGGAGGATTTCAAAATAAGCGGGTTTGATCCCAGAGATGCCCAAGTGGGGCATTCAGTGGAATACGAATTCGACGTGGAGATTGATCAGAAGGTGATTCCATTCAAGCTCTTAGAGGACGTGAATCGCTGGGAGTACGTGGATCTTCCCATATTTCGGGTCCAGGAACCGGGTCCACCTGGTGAAGAAAACGCTCTGGTCCAGAAGCGGGATTCCAGTAATGGGTTGCCCGTTTTGGCTCCGTTCCAGTTGGCTGGACCCATGGAGCTTTGGATCCAAGACGCCAAGGATATGAGGATTTCTCTCCCTCATGATGTTGATGCTGGTGTGTTGAAGAAAGTGATCATAGCTGATGGTGCTGTTGTCACAGTCAAAGGTGCAAGATCAGTTAGCCTTCGCCAACCTCTTGATCTCCCCCTCCCCTTAAACAAAACACAGAATGGATTTGCTGCCGGCCTTCTAACTCTAGCTGAGCAGCTCCGCCACGCATCTCGCTCCCAAGATGCTCCTCTCCTTTCACTCCGCATTGTTGGTCCAACGTCACTTTCATCCCCTTCATCATCAACGTCTTCACATAACCGGCTTAAGCTAAAGCGCCTCGCACCAGGACTTGTGGAGTTATCTTCCCCATCAAACACAAAAGCCATTGAAACCCTATCTACTATTGATCTCCAAAATGAAGCTCCAACTCTTTTGACTCCGACTCAGTTTACCACAATGTGGCCTCTTGCTTCCATCAATGGATCAAACGCTAACTTGGTGGGCTTTGAGGCTTTGTTGTCATCTGTGTTGGGTCCTAAGGCAAACAAGAAGGGCTCCTTCAAGTTGTTGAAGGCAGATGTTTCTGCTCATACATTTGTGAAGATAGGGTTTCAAGCAGAGAAGAAGCTGAAGGAAGGAGATGCTGAGGGAGTTAGCTTGGAGGGTTTCCCGGAGTGGAAAACTAAGCCGGAGACGGTGAAAATGCACTTTGAGGTGCTAGCTAAGATTGAAGGTGATAGAGTCATACCAGAAAGAGTGATGCCTGTGAGACCTGTAGTTGTGGAAGACACAGTAGCGCCAAGTGTGCTTACTGGAAATGTCAGCATGTCTAGTTTACCAATGATGTACCCTCCTCCCAATCCCTTTACCCTGTGA 1776 0.4476 MEEEEVSFVQEWELNNIMNAYEYPTLLPIEAAGFGDTLLHHHHNNYSFIPGGHINYTSNPNMMIPKTSSIEERPRKVMKSSTNTISDQITSSHSNLSEVDVSFVMEQMGFCKKHSCDLCGSNNMNNVGADVSMCGGDDEEWKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQEKVKSLEEEEAKGKRKECVDLKEAIVKGLGFAAEDFKISGFDPRDAQVGHSVEYEFDVEIDQKVIPFKLLEDVNRWEYVDLPIFRVQEPGPPGEENALVQKRDSSNGLPVLAPFQLAGPMELWIQDAKDMRISLPHDVDAGVLKKVIIADGAVVTVKGARSVSLRQPLDLPLPLNKTQNGFAAGLLTLAEQLRHASRSQDAPLLSLRIVGPTSLSSPSSSTSSHNRLKLKRLAPGLVELSSPSNTKAIETLSTIDLQNEAPTLLTPTQFTTMWPLASINGSNANLVGFEALLSSVLGPKANKKGSFKLLKADVSAHTFVKIGFQAEKKLKEGDAEGVSLEGFPEWKTKPETVKMHFEVLAKIEGDRVIPERVMPVRPVVVEDTVAPSVLTGNVSMSSLPMMYPPPNPFTL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2826 591 PANTHER TUNICAMYCIN INDUCED PROTEIN 188 591 - -
Sto2g2826 591 Gene3D - 140 210 IPR036638 GO:0046983
Sto2g2826 591 SMART finulus 136 186 IPR011598 GO:0046983
Sto2g2826 591 Pfam Helix-loop-helix DNA-binding domain 141 181 IPR011598 GO:0046983
Sto2g2826 591 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Sto2g2826 591 Coils Coil 170 197 - -
Sto2g2826 591 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 191 IPR036638 GO:0046983
Sto2g2826 591 PANTHER TUNICAMYCIN INDUCED PROTEIN 188 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2826 Sto-Chr2 41787705 41797684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2826 140 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 63.636 9.71e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g2826 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2826 - - adu:107468712 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2826 2 41787705 41797684 Sto2g2826 2 41787705 41797684 ECH