Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2810 atggGAAGAGGGAAGATTGCGATTAGAAGAATAGACAATTCAACGAGCAGGCAAGTGACTTTCTCGAAGAGAAGAAGTGGGTTGTTGAAGAAAGCAAGAGAGCTTTCTATTCTGTGTGATGCTGAAGTTGGATTAATTGTCTTTTCCAGTTCTGGAAAACTCTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTACAACAAGCTAAAGGAGGAGAATCATCAGCTTATGAATCCTGCTTCAGAAGTCAAGTTATGGCAGAGAGAAGCAACAATCCTGAGGCAACAACTGCACTACTTGCAAGAATGCCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTGGGCATTAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAAGGTGTCCGGATGAGAAAGGATCAAATTTTAACTGATGAGATAAAAGAGCTACAGCACAAGGGAAATCAAGTTCATCAAGAAAATGTAGAACTCTATAAAAGGTTAGACCTCATCCATAAAGAAAATGCAGAATTACAAAAGATTTATAAAGCAAGGAATATGAacgaagaaaatgaaaattccaATCCACCATACACCATCAGCCATGGATGTGATGTACATGCACCTATCCGTCTCCAGCTGAGTCAGCCACAGCCTCAATATAGCGAACCACCGGCCAAAGCAATGAAACTTGGATTACAGCTGCGCTAG 717 0.3961 MGRGKIAIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIVFSSSGKLYDYASTSMKSVIERYNKLKEENHQLMNPASEVKLWQREATILRQQLHYLQECHRQLMGEQLSGLGIKELQNLENQLEMSLKGVRMRKDQILTDEIKELQHKGNQVHQENVELYKRLDLIHKENAELQKIYKARNMNEENENSNPPYTISHGCDVHAPIRLQLSQPQPQYSEPPAKAMKLGLQLR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2810 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto2g2810 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Sto2g2810 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto2g2810 238 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Sto2g2810 238 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto2g2810 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 237 - -
Sto2g2810 238 Coils Coil 120 140 - -
Sto2g2810 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto2g2810 238 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Sto2g2810 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2810 Sto-Chr2 41651337 41662389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2810 1 237 MADS-box Gene Family AT2G14210 62.185 9.34e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto2g2810 K-box 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2810 K09264 - gmx:100808145 378.252