Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2783 ATGGCGAGAAGGAAGATAGCAATAAAGAAGATAGAGAATGTGTCAGCGAGGCAAGTGACATTctcaaagagaagaagaggtCTTTTCAAGAAGGCTCAAGAACTCTCTACTCTTTGTGATGCTGAGATTGCTCTCATTGTCTTTTCTCCTGCTGGAAACCTCTTTCATTTTGCAACTACAAGCATCGGGCAGGTAACTGAAAGGCGAATCTCGTACTCAGAGCTTAAGCTTGATCTTGACAAATCACACCAGCCTTATGATAATGAATTACAGGTTGAAGGTGAATATTTTAAGCTGGAGAAGGCTCTAAAAGAAAAGACTCATGAactgaggtatatatatatatatatatatatatatatatcatggaaTAGAGATTTGATAAAAAGATATGCCTCAAtgtga 405 0.3284 MARRKIAIKKIENVSARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSPAGNLFHFATTSIGQVTERRISYSELKLDLDKSHQPYDNELQVEGEYFKLEKALKEKTHELRYIYIYIYIYISWNRDLIKRYASM 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2783 134 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Sto2g2783 134 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto2g2783 134 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 111 - -
Sto2g2783 134 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 111 - -
Sto2g2783 134 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto2g2783 134 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sto2g2783 134 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2783 Sto-Chr2 41440239 41443516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2783 1 113 MADS-box Gene Family AT2G22540 51.304 1.97e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto2g2783 SRF-TF 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2783 - - jre:108995741 123.635