Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2764 ATGGCTCTCCATCACCGGAAGATTCTAGAAGAGGTCTGTACTCTCTACTGCCATATCAAAGAATCTTGTTCCGATTCTGACTCCGACTGCCTCGTCTGCTTCAAACGCTGTTTATCCCAATCCCCCACCCACTCCGTCATTCCCCCCTCTCCTCCCATCTACATCGACCATGAAGATTTCTATGATCCCGCCAAATCCCGCAAGATCGGAACCGTCTTAACCGTCGTCATCGCCGTTCTCGCCTCCgctttcctcctcctcctctgcttCGCCGTCTACACCAGATTCCGCCGCCGCCGCAGCCGCAGCCGGCCCCCCACCACGACCGGCGGCCCCGAAACAGACTTCTTCGGCGCCGGCGCCAACGACTTCCTGGATGAGGAGCACGGTCCTATCGTGGACCATCCCATATGGTACATACGCACCCCGGGTCTTCAACAATCTATCATTTCAGCGATTACTGTGTGTAAATACAAAACAGGTGAGGGTTTAATCGAAGGAACAGAGTGCTCTGTTTGCTTGAGCGAGTTTGAAGAAGACGAGAGTCTTCGACTTTTGCCCAAGTGTAATCACGCTTTCCATCTCCCTTGTATTGATACCTGGCTTCGTTCTCACACTAATTGTCCTAATTGCCGCGCTCCGATTGTGTCCAATCCGGCGGCGACGGCGGCAATCGTGACGTCGCCGGAGCCGAATGATGCTAATTCGAGTAGCACAGAGGAGGTAGAGGTGGAGATTGTGGAGAATGGAAGCGAGAGCGAGGAAATTGGGGAGGAAGAAAGAGGGAGTGAAAGCGAAGGATCAGGATTAGGATCGGGATCGGGTGAAGGATCAGAGGTGGAGAATTTGCAGGCGAGAAGAAGATCGGTGTCTCTGGATCCTTCTTATGTGGAGAAGATCAATCGAGCTCTTGCTCTTGCTGGTACGAATGCGGTTTCTGGTTCGAAGAGGGTTTCGAAGAGTAGTTCATCGTCTTTCAGGTTAAGGTCGCTTCAGAGCGTTGCGGGAACTTCAATGAAGAGGTCGAGATCTTACAATGGGAAGAATTTGTTGGGATGTTTCCATCATGTCTCTTCTCCACAGTGA 1086 0.5101 MALHHRKILEEVCTLYCHIKESCSDSDSDCLVCFKRCLSQSPTHSVIPPSPPIYIDHEDFYDPAKSRKIGTVLTVVIAVLASAFLLLLCFAVYTRFRRRRSRSRPPTTTGGPETDFFGAGANDFLDEEHGPIVDHPIWYIRTPGLQQSIISAITVCKYKTGEGLIEGTECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPNCRAPIVSNPAATAAIVTSPEPNDANSSSTEEVEVEIVENGSESEEIGEEERGSESEGSGLGSGSGEGSEVENLQARRRSVSLDPSYVEKINRALALAGTNAVSGSKRVSKSSSSSFRLRSLQSVAGTSMKRSRSYNGKNLLGCFHHVSSPQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2764 361 CDD RING-H2_EL5_like 169 212 - -
Sto2g2764 361 MobiDBLite consensus disorder prediction 245 261 - -
Sto2g2764 361 Pfam Ring finger domain 169 212 IPR001841 -
Sto2g2764 361 MobiDBLite consensus disorder prediction 227 244 - -
Sto2g2764 361 MobiDBLite consensus disorder prediction 267 284 - -
Sto2g2764 361 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Sto2g2764 361 SUPERFAMILY RING/U-box 164 218 - -
Sto2g2764 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 219 IPR013083 -
Sto2g2764 361 SMART FANCL_C_2 166 219 - -
Sto2g2764 361 SMART ring_2 170 211 IPR001841 -
Sto2g2764 361 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 351 IPR044675 -
Sto2g2764 361 MobiDBLite consensus disorder prediction 227 284 - -
Sto2g2764 361 PANTHER RING-H2 FINGER PROTEIN ATL54 20 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2764 Sto-Chr2 41309689 41311707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2764 53 229 C3H Transcription Factor Family AT1G72220 48.066 1.10e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2764 - - lja:Lj6g3v2193690.1 242.276