Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2724 TTGGGAAAAACAAATGACAAGATGGAGGTGATGGAGGATGTTAATGTTACTTCAAGAAGTGAGGAGAGTAATTGTGAAGAACTGGTCTCTCCTGAAGCTAAATCAAAAGTGATGGATGTGGATTTGGGAATGTGTAGCACTGTTGATAATGAAGTTCTGGATGCTAAAGTGGCTGATTCTTCTTGTCTAAATGTAGAGAAAGTTTATGAATTTTTGGTAAAGTGGGTAGGAAAATCACATATTCATAATAGTTGGATTTCTGAATCCCAGTTGAAACGCCTTGCAAagagaaaattagaaaattacaAGGCAAAGTATGGGATGGCTATAATAAATATCTGTGAGGAGCGTTGGAAGCAGCCTCAGCGGGTGCTTGCTCTCCGTACATCCAAAGACGGAACGTCTGAAGCATTTGTAAAATGGACTGGACTACCTTATGATGAATGCACTTGGGAAAGTTTAGATGAACCTGTTCTTAAAACTTTTTCACATCTGATTGATGTTTTTAACAAAGCTGAAACCCTCACGCTGGAAAAGAATGCATCAAAGGATAATTCCACTATGAAAAACAATGACCATCAAAATGAGTTGGTTAATCTTACAGAACAACCTAAGGAGCTAAAAGGTGGTTCTTTGTTTCCCCATCAGCTTGAGGCTCTGAATTGGTTGCGGAAATGCTGGTTTAAATCCAAAAATGTGATACTTGCTGATGAAATGGGGCTTGGAAAAACAGTATCTGCTTGTGCCTTTATTTCATCGTTGTATTTTGAATTCAAAGTTGGACTGCCCTGCTTGGTCCTGGTCCCACTTTCGACAATGCCTAATTGGCTTGCTGAATTTGCATTATGGGCTCCAGACTTGAATGTTGTGGAATATCATGGTTGTGCAAAAGCAAGAGCTACAATTCGCCAGTATGAATGGCATGCTAGTGATCCAAGTGGATTGAATAAAAGAACAGATGCCTATAAATTTAATGTGCTCTTAACTACATATGAAATGGTGCTTGCTGACTCTTCTCATTTGCGTGGAGTTCCTTGGGAAGTTCTTGTGGTTGATGAGGGACATCGACTGAAGAATTCTGAAAGTAAACTTTTCAGCTTGCTCAACACATTCTCTTTTCAGCATCGTGTACTCTTGACTGGTACCCCTCTCCAAAACAACATAGGTGAGATGTACAACTTGCTCAATTTCTTGCAACCGGCTTCATTTCCTTCCCTGTCTACATTTGAGGAGAAATTCAATGATCTTACAACTGCCGAGAAAGTTGATGAATTGAAAAAACTTGTTGCCCCTCATATGCTCCGTAGGCTGAAAAGGGATGCTATGCAAAATATTCCACCTAAGACTGAAAGAATGGTTCCTGTTGAGTTGTCATCCATCCAAGCTGAATATTACCGTGCAATGCTTACCAAGAATTATCAGATATTGCGTAATATTGGGAAAGGGGTTGCACAACAATCTATGCTAAACATTGTTATGCAACTTAGAAAGGTCTGCAATCATCCATATCTCATACCAGGAACTGAGCCCGATTCTGGATCAGTGGAGTTTCTTCAGGAAATGAGAATAAAGGCCTCAGCCAAGTTGACTCTTCTTCACTCTATGCTGAAGATTTTACATAAAGAAGGACACAGAATCCTTATTTTCTCACAAATGACCAAGCTTCTTGACATCCTAGAGGATTACTTGAGCATAGAATATGGGCCTAAAACTTATGAGAGAGTGGATGGCTCTGTTTCTGTGGCTGATCGTCAAGCAGCAATTACACGCTTTAACCAAGACAAAAGTCGATTCGTTTTCTTGTTATCCACTCGCTCCTGTGGTCTTGGGATAAATCTGGCAACTGCTGACACAGTCATTATCTATGACTCTGATTTCAACCCCCATGCTGATATCCAAGCAATGAATCGAGCACATAGAATTGGACAATCAAATAGACTTTTGGTATATCGGCTTGTGGTTCGTGCCAGTGTTGAAGAGCGCATCTTGCAACTTGCTAAGAAGAAGCTGATGCTAGATCAGCTTTTTGTAAATAAGTCTGGATCCCAAAAGGAAGTAGAGGATATTTTAAAATGGGGTACTGAAGAACTCTTCAGTGATTCTCCTGGTCAGAATGGGACAAATGGAAGTGAAAATAATAGCAACAAAGATGAGATAGTAGTAGACGTAGAACACAAGCATCGGAAGAGGACTGGTGGTCTGGGAGATGTTTATAAGGACAAGTGTACAGATAACGGCAGCAAAATTGTGTGGGATGAAAATGCAGTTTTAAAATTGCTTGATCGCTCAAACCTTCAAGATAGTTCAACTGACATTGCTGAAGGGGATTCTGAGAATGATTTACTGGGTTCAGTCAAGTCCCTTGAATGGAATGACGAACCAGCTGAAGAACACGGGGCAGGCGAATCGCCTCCTTGTGGGACTGATGATATCTGTACACAAAACTCTGAGAGGAAAGAGGATAATGTTGTGATTAGTACTGAAGAAAATGAATGGGACAGACTACTGCGAGTGAGGTGGGAGAAATATCAGAGCGAGGAGGAAGCAGCTCTTGGACGTGGAAAGCGGCTTAGGAAAGCTGTTTCTTATAGAGAAGCATATGCACCCCATCCAAGTGAAACTATGAGTGAGAGTGGTGGTGAGGAGGAAAAAGAGCCAGAACCAGAACCTGAACGTGAATATACACCAGCAGGACGGGCCCTAAAGGCAAAGTTTGCTAAGCTCCGTGCTCGGCAGAAGGAACGGCTTGCTCGAAGGAATGCAATTGGAGGATCTCTTTATGCTGAGGGATTCCCTAGAACTGAGTCACTCCCCCAGTCTACTGCCAATGCAGAGAGTATGGATCTTGGAACTTTATCAAAGCATCCTGCTGGAGAGGGCCCTTCTATCAATTTAGAGGACAACAAATCTCTATTACTTTCTGAAGCTCAGAAGAGCGGTGCTGATTCCATTTCAAGAATGGGCAGGCTATCAAAACATAGAATGGGCAATCACACTAATGTTTCTTCTGTCAGTAATATAGGCCATTCTCCACCTGACATTTTCCTTCCAAATCATAATTATAAGGGGCTAAACATCACAAACTGTATGCCCCCCAATAATTTGTTACCTGTTTTAGGACTTTGTGCTCCTAATGCTAACCAACGGGAATCATTGGAAAGTAATCCTTCAAAGTTAAATTGGAGACAAAATAGACGTGGAGCCAGACAAGAGTTTCCATTTAGTCTTGCTCCTTCCTCTGGGACATCATCCATGGAGACTGGTGTAAGACGTCAGGAAACAGCTGCAAATGCCAAACTACCGGATGCACTGGCACATATTTTACAAGAGAGTTTCAAGAACAGTATTCCTGATAGCAGTCTTCCATTTGTTCCTCTTCCACCAGCTGTGCAAGGAAAAGAACCCAATGCATTTGAAACTTCAGGTGCTCGATTCTCTGCCTTTTTGGAGAAAATGGCCCTGCCAAACCTGCCATTTGATGAAACATTGCTGGCCAGATTTCCTCATACAACTAAGAACATGCCAAATGCACTTCCAGACCTTTTACCTAATTTGTCATTAGGTAGCAATGGCTCCATGCAAGACCTTCCAGCAATGCCATTACTACCTAAATTCAAAATCCCCCCAGAAGATTTATTCAGATATAATCAGCAAGATGGGGATGTGACCCCCACTCTGGGTTTGGGACAAAGGCAATCTTCATCCACTTCATTCCCCGAAAACCATAGGAAGGTGCTTGAAAGCATAATGATGAGAACTGGGTCTACATCTAGTAACTTGAATAAAAAGAAGTCGAAATCAGATGGGTGGTCTGAAGATGAACTTGATTCCCTCTGGATTGGTGTTCGTAGGCATGGAAGAGGTAATTGGGACATTATGCTCAGAGATCCCAAGTTGAAGTTTTCGAAGTATAAAACACCTGAAGATTTGTCAGCAAGGTGGGAAGAGGAACAACTCAAGGTCTTTCAGGGGCCAGCTTTTCCTGTACCAAAATCAGCAAAGATGACAAAGTCTACTAAATCTGCACTTTTTCCAATTTCTGATGGGATGATGGAAAGGGCTTTGCATGGGAGCAAATTCATGTTGTCACCAAAATTTCAAAACCATTTGACTGAAATGAAATTGGGGGTTGATCAACCTGGTAttcaaaatgaccattttgtgcCTCTTCCTACTTTTAGTTATGATATACACAGAGCAACGTTTCCTGAAGATACTTCTGCTGAACCATCTGATAGAGCAGGGACTTCTTCCAATGTACCTGCTGAAAGACCATTTCTACTAGATTCTAATGGAACCAGTTGCTTGAGTTCTTTAGGTTTGAATTGCTCTGGAAGTGCTGATAGACAACGAAGAGAGGATCAACAAGGCACCAGTAAGTGTGAAAAGCCACCTGGACTTCTGGATGGGTCTTTCAATGATATGCATGATAATCGCACTCATGTAGGAAATGGTGGATCTACTAGCTCAGGATTGGTATCTGACCCCATTAAAGGAGCCAAACCTTTCCACTCAAAAGGGGAGGATGGAGTTGGAAGTAGTACTTCAAAAGACAAGCTTCCGCACTGGTTACGAGAGGCTGTCAGCTCCCCTGCCAAACACCCTGATTCTGACCTGCCTCCCACTGTGTCAGCTGTGGCTCATTCAGTTCGCTTGCTATACGGAGAAAATAAGCCTACTATTCCTCCATTTGTGGTTCCTAGTCCACCACCTTCCCTTCCAAATGATCCCAGGCGTAGTCGGGTGAGGAGAAGGCGCTCAAGAATTCCTCAGTTCATCTTGGATGATCCTAACCTAAATCCAATCCGTCCGAGGAAGAGGAAGTTTAAAAGGAGGAATCCCATATTCGCCCCTAGGAATCCTCTAGAAGATGTTGCTGGAAGCAGCAAGGACTTCCATGTTGACGATATTGAATCAAAAAGGACGAGCAGCACTGGACTGTCCCCTTCTCCTGAAGTGCTCCAGTTGGTGGCATCCTGTGTTGCTTCAGGTTCGAGTCCACATCTTCCATCGATTCCTGGCACTTCAAGATTTCCTGAGGGCAAGCTTCCATTGCCAAGACCTGTTAAACCCACCAAATTTGAAGACTCTGAAGCTGCATTTGGAAACAAGATGCCCAGGGAGTCTTCACCAAAAATTTTGGGTTCACTTGAGGAGCATGAAGCAGAACAACATGATAGTGGAGATTCCAGCAAGACTCAGTCAGATCCCTCTAGGATTGAACGGcctgatgaagatgaagaggagGTATCGTCTGAGGGAACTGTCTCAGATCATGGTTTAAGAGATCAGGAAACATAG 5301 0.4226 LGKTNDKMEVMEDVNVTSRSEESNCEELVSPEAKSKVMDVDLGMCSTVDNEVLDAKVADSSCLNVEKVYEFLVKWVGKSHIHNSWISESQLKRLAKRKLENYKAKYGMAIINICEERWKQPQRVLALRTSKDGTSEAFVKWTGLPYDECTWESLDEPVLKTFSHLIDVFNKAETLTLEKNASKDNSTMKNNDHQNELVNLTEQPKELKGGSLFPHQLEALNWLRKCWFKSKNVILADEMGLGKTVSACAFISSLYFEFKVGLPCLVLVPLSTMPNWLAEFALWAPDLNVVEYHGCAKARATIRQYEWHASDPSGLNKRTDAYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSTFEEKFNDLTTAEKVDELKKLVAPHMLRRLKRDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLQEMRIKASAKLTLLHSMLKILHKEGHRILIFSQMTKLLDILEDYLSIEYGPKTYERVDGSVSVADRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFSDSPGQNGTNGSENNSNKDEIVVDVEHKHRKRTGGLGDVYKDKCTDNGSKIVWDENAVLKLLDRSNLQDSSTDIAEGDSENDLLGSVKSLEWNDEPAEEHGAGESPPCGTDDICTQNSERKEDNVVISTEENEWDRLLRVRWEKYQSEEEAALGRGKRLRKAVSYREAYAPHPSETMSESGGEEEKEPEPEPEREYTPAGRALKAKFAKLRARQKERLARRNAIGGSLYAEGFPRTESLPQSTANAESMDLGTLSKHPAGEGPSINLEDNKSLLLSEAQKSGADSISRMGRLSKHRMGNHTNVSSVSNIGHSPPDIFLPNHNYKGLNITNCMPPNNLLPVLGLCAPNANQRESLESNPSKLNWRQNRRGARQEFPFSLAPSSGTSSMETGVRRQETAANAKLPDALAHILQESFKNSIPDSSLPFVPLPPAVQGKEPNAFETSGARFSAFLEKMALPNLPFDETLLARFPHTTKNMPNALPDLLPNLSLGSNGSMQDLPAMPLLPKFKIPPEDLFRYNQQDGDVTPTLGLGQRQSSSTSFPENHRKVLESIMMRTGSTSSNLNKKKSKSDGWSEDELDSLWIGVRRHGRGNWDIMLRDPKLKFSKYKTPEDLSARWEEEQLKVFQGPAFPVPKSAKMTKSTKSALFPISDGMMERALHGSKFMLSPKFQNHLTEMKLGVDQPGIQNDHFVPLPTFSYDIHRATFPEDTSAEPSDRAGTSSNVPAERPFLLDSNGTSCLSSLGLNCSGSADRQRREDQQGTSKCEKPPGLLDGSFNDMHDNRTHVGNGGSTSSGLVSDPIKGAKPFHSKGEDGVGSSTSKDKLPHWLREAVSSPAKHPDSDLPPTVSAVAHSVRLLYGENKPTIPPFVVPSPPPSLPNDPRRSRVRRRRSRIPQFILDDPNLNPIRPRKRKFKRRNPIFAPRNPLEDVAGSSKDFHVDDIESKRTSSTGLSPSPEVLQLVASCVASGSSPHLPSIPGTSRFPEGKLPLPRPVKPTKFEDSEAAFGNKMPRESSPKILGSLEEHEAEQHDSGDSSKTQSDPSRIERPDEDEEEVSSEGTVSDHGLRDQET 1766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2724 1766 SUPERFAMILY Homeodomain-like 1269 1315 IPR009057 -
Sto2g2724 1766 Pfam Chromo (CHRromatin Organisation MOdifier) domain 120 171 IPR023780 -
Sto2g2724 1766 Pfam Chromo (CHRromatin Organisation MOdifier) domain 66 104 IPR023780 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 934 948 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1501 1520 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 866 898 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 698 716 - -
Sto2g2724 1766 CDD SF2_C_SNF 526 653 - -
Sto2g2724 1766 Gene3D - 1240 1341 - -
Sto2g2724 1766 SMART DUF1087_2 810 871 IPR009463 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 697 716 - -
Sto2g2724 1766 Pfam CHD subfamily II, DUF1087 826 865 IPR009463 -
Sto2g2724 1766 Coils Coil 183 203 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1443 1520 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1403 1426 - -
Sto2g2724 1766 Gene3D - 446 673 IPR027417 -
Sto2g2724 1766 CDD CD2_tandem 118 171 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1713 1745 - -
Sto2g2724 1766 SUPERFAMILY Chromo domain-like 65 107 IPR016197 -
Sto2g2724 1766 Pfam Helicase conserved C-terminal domain 531 642 IPR001650 -
Sto2g2724 1766 Gene3D - 32 106 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1562 1576 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1626 1640 - -
Sto2g2724 1766 ProSiteProfiles Chromo and chromo shadow domain profile. 119 181 IPR000953 -
Sto2g2724 1766 SMART chromo_7 117 174 IPR000953 -
Sto2g2724 1766 SMART chromo_7 46 107 IPR000953 -
Sto2g2724 1766 SUPERFAMILY Chromo domain-like 111 171 IPR016197 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1560 1586 - -
Sto2g2724 1766 CDD SANT_TRF 1270 1314 - -
Sto2g2724 1766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 690 IPR001650 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1615 1766 - -
Sto2g2724 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 688 IPR027417 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 792 821 - -
Sto2g2724 1766 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 37 1759 - -
Sto2g2724 1766 SMART ultradead3 208 412 IPR014001 -
Sto2g2724 1766 Coils Coil 1761 1766 - -
Sto2g2724 1766 Gene3D - 121 171 - -
Sto2g2724 1766 PANTHER PROTEIN CHROMATIN REMODELING 4 37 1759 - -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 1477 1494 - -
Sto2g2724 1766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 224 401 IPR014001 -
Sto2g2724 1766 CDD CD1_tandem 48 103 - -
Sto2g2724 1766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 436 IPR027417 -
Sto2g2724 1766 Gene3D - 203 445 IPR038718 -
Sto2g2724 1766 Pfam SNF2-related domain 230 505 IPR000330 GO:0005524|GO:0140658
Sto2g2724 1766 ProSiteProfiles Chromo and chromo shadow domain profile. 47 105 IPR000953 -
Sto2g2724 1766 SMART helicmild6 557 642 IPR001650 -
Sto2g2724 1766 MobiDBLite consensus disorder prediction 929 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2724 Sto-Chr2 40924045 40934029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2724 192 685 RAD5 or RAD16-like Gene Family AT1G02670 25.868 1.02e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto2g2724 SNF2_N 2.3e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2724 - - aprc:113857453 2569.27