Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2722 ATGGCGGCTGCGGCTACGACGTCGGTAGTGCCGGCCAACCGGCGGAGGGTTCCGAATCCACAGGAGGATATGGAGTTCGAGACGACGGAGGGAATAGAGCCTATCGCGAGCTTCGAGAACATGGGCATCAAGGAAGATCTGCTCCGAGGAATCTATGCGTATGGGTTCGAGAAGCCCTCGGCGATCCAGCAGCGTGCCGTTAGACCCATTATTGAAGGACGAGATGTTATCGCTCAGGCTCAATCTGGTACTGGCAAGACGTCTATGATTGCCCTCACCGTCTGCCAAGTCGTCGATACTTCTATTAGAGAggtccAGGTCTTGATCTTGTCACCAACAAGGGAATTGGCCTCACAGACTGAAAAGGTTATCTTGGCAATTGGAGATTACATAAACATTCAAGCTCATGCATGTATTGGAGGTAAAAGTGTAGGAGAAGATATAAGGAAGCTTGAGTATGGAGTTCATGTGGTTTCTGGAACTCCTGGACGAGTTTGTGACATGATTAAAAGGAGAACATTGCGCACTAGAGCGATCAAGTTGTTGGTTCTTGATGAATCAGATGAAATGTTGAGCAGAGGATTTAAGGACCAGATTTACGATGTGTATAGATATCTCCCTCCAGAGCTTCAGGTTTGCCTGATTTCTGCTACCCTTCCTCATGAAATTCTGGAGATGACAAATAAGTTCATGACAGATCCTGTAAGGATCCTAGTAAAACGTGATGAGTTGACTTTGGAGGGCATCAAGCAATTTTTTGTGGCAGTTGAAAAGGAAGATTGGAAGTTTGATACTCTATGTGATCTTTATGATACCCTCACCATCACTCAAGCTGTTATCTTCTGCAACACCAAGCGAAAGGTGGACTGGTTAACAGAAAAAATGCGAAACAACAATTTCACTGTCTCATCAATGCATGGGGACATGCCTCAGAAAGAAAGAGATGCAATTATGGCAGAGTTCCGTGCTGGTACAACTCGTGTACTAATCACTACAGATGTTTGGGCTCGTGGTCTTGATGTTCAGCAGGCATTATACATCTTCTGTTATCAGGTTTCTCTAGTTATCAACTATGACCTTCCAAATAATCGAGAACTTTACATCCATCGAATTGGTCGATCCGGACGATTTGGACGCAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGATATCAAGATCCTTAGAGATATTGAGCAATATTACAGTACTCAAATTGATGAAATGCCAATGAATGTTGCTGATCTCATATAA 1254 0.4378 MAAAATTSVVPANRRRVPNPQEDMEFETTEGIEPIASFENMGIKEDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQVVDTSIREVQVLILSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQALYIFCYQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2722 417 CDD DEADc_EIF4AIII_DDX48 38 238 - -
Sto2g2722 417 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 36 64 IPR014014 GO:0003724
Sto2g2722 417 Pfam Helicase conserved C-terminal domain 262 378 IPR001650 -
Sto2g2722 417 Gene3D - 26 244 IPR027417 -
Sto2g2722 417 Pfam DEAD/DEAH box helicase 61 223 IPR011545 GO:0003676|GO:0005524
Sto2g2722 417 SMART helicmild6 289 378 IPR001650 -
Sto2g2722 417 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 237 IPR014001 -
Sto2g2722 417 SMART ultradead3 55 252 IPR014001 -
Sto2g2722 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 400 IPR027417 -
Sto2g2722 417 CDD SF2_C_DEAD 249 387 - -
Sto2g2722 417 Gene3D - 245 417 IPR027417 -
Sto2g2722 417 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 417 IPR001650 -
Sto2g2722 417 PANTHER BNAC03G41130D PROTEIN 17 410 - -
Sto2g2722 417 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 17 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2722 Sto-Chr2 40897963 40901382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2722 26 417 Eukaryotic Initiation Factors Gene Family AT3G19760 88.265 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2722 K13025 - gmx:100795032 760.755