Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2677 ATGAAATTCGTGAAGGACTCGAGTTCGAGACAGGTCACGTTCTCGAAGCGACGGACCGGTGTGTTCAAGAAGGCAAATGAGCTAGCAACTTTGTGCGGTGCCCAAGTTGCTATTGTTGCTTTCTCTCCCGGAGGAAAACCTTTCTCTTTTGGCCAACCAAGTGTTGATGATGTGACCAACAAGTTTCTTCATAATTCCACAAAAAGCtccaataataacaataatggaGGATCCTTTGATGGTGTTATAATGGAGAAACTAAACCAAAAATTCATGGATTTGATGAGTGAGGTCcaagtggagaagaagaaggggaagatgCTTGATAAGagcttgaagaagaagaaattggcATGGGAAGGAATGGATTTGAATGAGCTTAAGAAGCTGAGTGGTTCGTTGAAAAGGCTCGAAGAAGATGTGCAAGAGTATATTAAGCAATTGGAGGCATCATTAAGCTTGATACTTCTTGCTGAGAAAGTTGTgTATGCAAAATCTATATGCATAGAATAA 513 0.3528 MKFVKDSSSRQVTFSKRRTGVFKKANELATLCGAQVAIVAFSPGGKPFSFGQPSVDDVTNKFLHNSTKSSNNNNNGGSFDGVIMEKLNQKFMDLMSEVQVEKKKGKMLDKSLKKKKLAWEGMDLNELKKLSGSLKRLEEDVQEYIKQLEASLSLILLAEKVVYAKSICIE 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2677 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Sto2g2677 170 Gene3D - 7 76 IPR036879 GO:0003677|GO:0046983
Sto2g2677 170 Coils Coil 127 154 - -
Sto2g2677 170 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Sto2g2677 170 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Sto2g2677 170 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Sto2g2677 170 PANTHER MADS BOX PROTEIN 3 163 - -
Sto2g2677 170 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Sto2g2677 170 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Sto2g2677 170 Coils Coil 84 104 - -
Sto2g2677 170 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2677 Sto-Chr2 40518465 40519050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2677 1 160 Type I MADS-box Gene Family AT2G34440 38.182 3.31e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto2g2677 SRF-TF 8.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2677 - - qlo:115990803 152.525