Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2665 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTTCACCTCAGGAAGGAGAGAAGCGAGTTCTTGATTCTGAGCTTTGGCATGCATGTGCTGgccctcttgtttctcttccaGCTGTTGGAAGCCGGGTCGTTTACTTTCCTCAGGGTCACAGTGAACAGGTTGCTGCATCAACCAACAAGGAGGTGGATGCCCATATCCCCAACTACCCTAGTTTACCTCCGCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATGCTGAGACAGATGAAGTATACGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAAGAGGCATACCTTCCGGCAGAGTTGGGCACTCCCAGTAAACAGCCAACAAACTACTTTTGCAAGACTTTGACTGCCAGTGACACAAGCACTCATGGGGGATTTTCTGTTCCTCGTCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTCTCGCAACAGCCTCCTGCCCAAGAGTTAATTGCGAGGGATTTACATGGTAATGAATGGAAGTTCAGACATATCTTCCGGGGTCAGCCTAAAAGACATCTACTTACAACGGGTTGGAGTGTCTTTGTGAGTGCCAAAAGACTTATTGCTGGTGATTCTGTGTTGTTTATCTGgAATGATAAGAATCAGTTGCTTCTTGGTATACGACGTGCTAATCGACCACAAACAGTGATGCCTTCATCTGTGCTATCAAGTGATAGCATGCATTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGGTTCACCATTTTCTATAACCCACGTGCTAGCCCGTCTGAATTTGTCATACCCTTAACAAAGTATGTTAAAGCTGTGTATCACACTCGAGTTTCAGTTGGCATGCGCTTCCGGATGCTATACATGGGCACTATAACTGGCATTACTGACCTAGATCCTGTTCGGTGGCCGAATTCTCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCGACAGCAGGAGATAGGCAACCTAGAGTGTCCTTGTGGGAAATTGAGCCATTAACTACTTTTCCCATGTATCCATCTCCATTCCCTCTTCGGCTTAAACGACCTTGGCCTCCAGGGCTGCCTTCTTTCCATGGCATGAAGGATGATGATTTGGGCTTGAATTCTCCGCTCTTGTGGGATAGAGGGCTTCAGTCTCTTAATTTTCCGGGAATTGGGGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCTTCCATTCTGAATCTGCAAACTGACATGTACCAAGCCATGGCTGCTGCTGCACTTCAGGATATTAGGACTATGGATCTTGCCAAACAGCATGCTCCATCCCTTCTTCAGTTTCAGCAACCACAGAACTTCCCCAACAGGACTGCTGCTTTAATGCAGGCCCAGATATTGCAGCAGTCTCAACCTCAGCAAGCTTTTCAAACCAATCAAGAGAATCAGCATCAATCTCAGTCTGAGGCTCAAAGTCAGACTCATCTTCAGCATCAACACTCTTTTGGGAATCATCACcatcagcagcagcagcagcagcagcaacaaCTACAGCAACAGCAAAGTTTTTCTGATCAGCAGATAACTAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCACCACCCCAACCCCAATCACCATCCGTGCCCGTGCAAGCTATTTCTTCGTTGTGCCATCAGCAAAGTTTTTCAGATTCAAATGGGAACCCTGTGACTACTTCTATGGTTTCTCCCCTTCATAGTATCTTGGGTTCATTTCCCCAAGATGAAACGGCCCACCTTCTCAACCTTCCTAGAACAAGCTCGTGGATACCTGTTCAACCTTCTACTACTATGTGGCCCTCCAAGCGTGTTGCCGTGGATCCTCTGCTTTCTTCTGGAGCTTCTCAATGTTCTTTGCCTCAGATGGATCAGTTAGGGCAACGCCAGAGTACTGTGTCTCAAAATGCAATTACATTGCCACCCTTTCCTGGCAGGGAGTGTTCGATAGACCAAGAAGGGAACACTGATCCACACAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTCTAATGCAGAATGGCATGTCAAGCCTTAAGGGGGTTAGCAGCACCAGTGACTCCACAATTGTACCTTTCCAATCTTCTAATTACCTGAATACTTCAGGCGCTGAATCTACATTGAATGCTGGAATGGCGCAAAGCATTGGTGATTCAGGCTTTATGCAGGGCCCAGATAACATGGGCCAAGGAAATTCACCAAACAAAACCTTTGTAAAGGTTTACAAATCAGGGACCTTCGGAAGATCATTGGATATTACTAAGTTCAGCAGCTACCATGAGCTGCGTAGAGAGCTCGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGAGAGAATGATGTTCTTCTCCTCGGCGACGGCCCTTGGCCGGAATTCGTCAATAGTGTATGGTGCATCAAGATACTCTCCCCACAAGAAGTGCAACAAATGGGTAACAATGGCCTCGAGCTTCTGAACTCGGTTCCAATCCAAAGACTCTCTAATGGAATTTGTGAAGACTACGCGAGCCGACAGGACTCGAAGAGTATAAGCTCCGATAGATCTCCTACTCTTAAATTATGGAACTTTGAATATCTTTTTGGAAAAGTCTTTGGATTGATGAATGATTCATCTCAAGTGCTTTACAGGACAGTGAAGCTGATGTTAGACTTATTGACTTTTAATGAATTATGGCCAAACCTTCTGCCTAAGCAAATCCACGAGATTAAGGATTTCCTTCTCACTGCACGAAGGAAGGATGCGAGATCAGTGAAAATCAAGAGGAGCAGAGATGTTGTCAAGTTTAAGGTCCGCTGCTCCAAGTACTTGTACACACTTTGTGTGTTTGACCCTGAGAAGGCTGATAAATTGAAGCAATCCCTTCCTCCAGATAGAACATGCATGTATTTTGTGAGGATTTGGGTTCTAAATTCTAATGCTGGTATACATCATGATGTTAACATTCCAAAGGTTTCCCATTTGCAAAGTGTTTAA 3072 0.4479 MRLSSAGFSPSPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLYMGTITGITDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDLGLNSPLLWDRGLQSLNFPGIGVSPWMQPRLDPSILNLQTDMYQAMAAAALQDIRTMDLAKQHAPSLLQFQQPQNFPNRTAALMQAQILQQSQPQQAFQTNQENQHQSQSEAQSQTHLQHQHSFGNHHHQQQQQQQQQLQQQQSFSDQQITSAVSTMSQFVSPPQPQSPSVPVQAISSLCHQQSFSDSNGNPVTTSMVSPLHSILGSFPQDETAHLLNLPRTSSWIPVQPSTTMWPSKRVAVDPLLSSGASQCSLPQMDQLGQRQSTVSQNAITLPPFPGRECSIDQEGNTDPHNHLLFGVNIEPSSLLMQNGMSSLKGVSSTSDSTIVPFQSSNYLNTSGAESTLNAGMAQSIGDSGFMQGPDNMGQGNSPNKTFVKVYKSGTFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGICEDYASRQDSKSISSDRSPTLKLWNFEYLFGKVFGLMNDSSQVLYRTVKLMLDLLTFNELWPNLLPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPDRTCMYFVRIWVLNSNAGIHHDVNIPKVSHLQSV 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2665 1023 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Sto2g2665 1023 ProSiteProfiles PB1 domain profile. 755 839 IPR000270 GO:0005515
Sto2g2665 1023 SMART B3_2 127 229 IPR003340 GO:0003677
Sto2g2665 1023 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Sto2g2665 1023 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 868 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto2g2665 1023 Pfam Auxin response factor 253 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto2g2665 1023 Pfam Ribosomal L38e protein family 929 990 IPR002675 GO:0003735|GO:0005840|GO:0006412
Sto2g2665 1023 Gene3D - 125 228 IPR015300 -
Sto2g2665 1023 MobiDBLite consensus disorder prediction 473 529 - -
Sto2g2665 1023 Gene3D - 928 995 IPR038464 -
Sto2g2665 1023 PANTHER AUXIN RESPONSE FACTOR 1 868 - -
Sto2g2665 1023 CDD B3_DNA 126 227 IPR003340 GO:0003677
Sto2g2665 1023 Pfam AUX/IAA family 749 840 IPR033389 -
Sto2g2665 1023 Gene3D - 751 844 - -
Sto2g2665 1023 Gene3D - 291 353 - -
Sto2g2665 1023 SUPERFAMILY CAD & PB1 domains 749 830 - -
Sto2g2665 1023 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2665 Sto-Chr2 40400574 40415870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2665 1 469 B3 DNA Binding Superfamily AT1G30330 85.331 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto2g2665 AUX_IAA 5.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2665 - - gmx:100796447 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2665 2 40400574 40415870 Sto2g2665 2 40400574 40415870 ECH