Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2652 ATGGGCGATCAGAAGCAAAGCAATGTGCCGGTTCTGCCATGGATGCGTGACCCAATTGATGTCACTCAATCTGAAGAATGCCCTCTTGAATGTGTTCCTTGCCTTGATCCCAGGTTGAAGTTGGCATTGCAGAATATGGGCATTTCTAAGCTCTTCCCTGTGCAAGTTGCAGTTTGGAAAGAGATAGTTGGGCCTGGTAATTTTGAGCGGGATATTTGTGTAAATTCTCCCACTGGAAGTGGGAAAACTTTAGCTTATGCTCTGCCAATAGTTCAAATGCTGTCAAAACGTGTTGTAAAATGCCTGCGAGCTTTAGTGGTGGTACCCACTCGTGATCTGGCCTTACAGGTTAAAGAAGTTTTTGATGCTATTGCATCTCCTCTAGGTTTACATGTTGGCTTGGCTGTTGGTCAATCTTCTATAGCTGATGAAATTTCTAGGCTTGTGAATATACCAGGATATGAGGCAGGCATGTGTTATGATCCTGAAGATATATCACTTCGGCACCAACTTGGGTTCCAAAGTAAGGTGGATATATTAGTAGCAACCCCTGGAAGGCTGATGGATCATATCAATGCTACTAAAGGGTTCACGCTTGAGCATCTTTATTATCTGGTGGTTGATGAAACAGATCGACTTCTTCGGGAGGCCTACCAATCCTGGTTACCTACTGTGCTGGAACTGACTCGACTTAAGGATGAGAATATTTTTCCACCAGCTGGTTCTTTCCttcctaatttttttagttcattAAGAACTAGAAGGAGATGcaGTGGTGTTGAGAGGGGATTCAAAGATAAACCTTACCCCAGGTTGGCAAAGATGGTTCTATCTGCTACATTAACCCAGCACCCAGGCAAGCTTGTTCAACTTGATCTACATCACCCAATATTCCTGAAAGCTGGGCAAATGCGTTACAGACTTCCAGAAAATTTGGAATCATTTAAACTGATCTGTGAAACAAAGGCCAAACCCTTGTATTTGGCTGcccttttaaaaacattgggaGGAGAAAAATGCATAGTGTTCACACAGTCTGTGGATTCAACACATCGCCTGTGCAAATTACTGAACTACTTTAGTGATCTTCAAATTAAGATCAAGGAGTATTCTAGTCTTCAACGCCAACATGTAAGAAGTAAGACACTGAAAGAGTTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCCTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTATTAATTATGACATGCCCAAATACATAAAGACCTATGTTCATCGGGCTGGTAGGACAGCCAGAGCTGGCCAGAATGGGCGTTGCTTCACATTGATGTGCAAAGATGAGGTATGA 1350 0.4193 MGDQKQSNVPVLPWMRDPIDVTQSEECPLECVPCLDPRLKLALQNMGISKLFPVQVAVWKEIVGPGNFERDICVNSPTGSGKTLAYALPIVQMLSKRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEISRLVNIPGYEAGMCYDPEDISLRHQLGFQSKVDILVATPGRLMDHINATKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRLKDENIFPPAGSFLPNFFSSLRTRRRCSGVERGFKDKPYPRLAKMVLSATLTQHPGKLVQLDLHHPIFLKAGQMRYRLPENLESFKLICETKAKPLYLAALLKTLGGEKCIVFTQSVDSTHRLCKLLNYFSDLQIKIKEYSSLQRQHVRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQNGRCFTLMCKDEV 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2652 449 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 29 444 - -
Sto2g2652 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 448 IPR027417 -
Sto2g2652 449 PANTHER RNA HELICASE 29 444 - -
Sto2g2652 449 CDD DEADc_DDX51 39 296 - -
Sto2g2652 449 CDD SF2_C_DEAD 312 443 - -
Sto2g2652 449 SMART ultradead3 47 315 IPR014001 -
Sto2g2652 449 Pfam DEAD/DEAH box helicase 53 285 IPR011545 GO:0003676|GO:0005524
Sto2g2652 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 299 IPR014001 -
Sto2g2652 449 Gene3D - 17 302 IPR027417 -
Sto2g2652 449 SMART helicmild6 351 435 IPR001650 -
Sto2g2652 449 Pfam Helicase conserved C-terminal domain 324 435 IPR001650 -
Sto2g2652 449 Gene3D - 310 449 IPR027417 -
Sto2g2652 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 449 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2652 Sto-Chr2 40327100 40332923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2652 71 448 Eukaryotic Initiation Factors Gene Family AT3G13920 23.575 3.62e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2652 K14807 - cit:102616133 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2652 2 40327100 40332923 Sto2g2652 2 40327100 40332923 ECH