Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2610 ATGTATCAATCAAAGACTCTTCCTAGTTCAAGTCTAGTTGGTGGCGACCTGTTAGTTCATGGTCAACATTTAGATTCTGGTGGTAGCACTATGGATCCTCTTAATGGAGGTAACAATGTCACCAACAATTCAAACCTCAGCTCAAAGCAACGTTTACGCTGGACACATGAGCTGCACGAACGTTTTGTTGATGCTGTGGCACAACTTGGTGGGCCAGATCGTGAGTATTCTTGTTCTATTTCTGGTGCCACACCTAAGGGTGTCCTCAGAGTTATGGGTGTACAAGGGTTAACAATATATCATGTCAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTCCCTGACTCCTCATCCGATGGGAAAAAAGttgagaaaaaagaaacagGGGACATGCTTTCCAATCTTGATGGTTCATCTGGGATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTGCAGAAGCGATTGCATGAGCAATTAGAGGCATGTTTTCCTTGTACTGACCTAATTATGATAATATATTGGCAGGTGCAGAGACAGCTACAATTACGCATAGAAGCGCAGGGTAAATACTTGAAGAAGATAATCGAAGAGCAACAGCGGCTCAGTGGGGTTCTGTCAGAAGCACCGAGCTCTGAGGTTGATGCCCTGGTATCAGGTGCTGCTTGTCAAGAACCTGAGAATAATAAGACTGACCCAGCAACCCCGGCCCCGACCTCGGAGTGCCCTCTCCAAGATAAAGTTGCCAAAGAACGTGCCCCGGCAAAGAGTCTCTCTATTGACGAATCTTTTTCGTCTCACCACGAACCATTGACACCAGATTCCGGTTGCAACATTGTTGGTTCCCCTATCGACAGTCCTAGAGGGGAGAGGTCAACGAAGAAGCAGCTAATGAGTATGGAAGGAGGAGTATATTCTAACCCAGAAATGGTGCTTCCACATCAGATATTGGAGTCAAGCATTTCTTCTTCATACCAGCAATCAAACAGTGTTTTCCATACCAGAGAGCAATTTGATCCTTCATTGGGTATATCTACAAGAAGTGAGGAGGCATTAGAAAAGCTTAATGATGGAGAGGTTGAAATCCAAATTCGTGATGATCTTCTTCTAAAAGATGGAGCTATTCTTTGCCCTACTCTAGAAAATGTTGATGCAATTAATGAATACATGTTGTCACTTCTTCCTGGTATTGAAGGGATTTACTCAAGTTCAGATAGTGTTTCAAAAGCAGACTTAAATACTGACTCTGTTGGATATCTTTACACCACTGATTTCTTGAACAGTATTAAAGGTTCTGCATTGCCTAATCATGAATTAAGATTGAAGATTGTACAACAGTACTAA 1353 0.4198 MYQSKTLPSSSLVGGDLLVHGQHLDSGGSTMDPLNGGNNVTNNSNLSSKQRLRWTHELHERFVDAVAQLGGPDREYSCSISGATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVEKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEACFPCTDLIMIIYWQVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPSSEVDALVSGAACQEPENNKTDPATPAPTSECPLQDKVAKERAPAKSLSIDESFSSHHEPLTPDSGCNIVGSPIDSPRGERSTKKQLMSMEGGVYSNPEMVLPHQILESSISSSYQQSNSVFHTREQFDPSLGISTRSEEALEKLNDGEVEIQIRDDLLLKDGAILCPTLENVDAINEYMLSLLPGIEGIYSSSDSVSKADLNTDSVGYLYTTDFLNSIKGSALPNHELRLKIVQQY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2610 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 355 - -
Sto2g2610 450 SUPERFAMILY Homeodomain-like 47 111 IPR009057 -
Sto2g2610 450 Pfam Myb-like DNA-binding domain 52 110 IPR001005 -
Sto2g2610 450 MobiDBLite consensus disorder prediction 226 296 - -
Sto2g2610 450 MobiDBLite consensus disorder prediction 227 241 - -
Sto2g2610 450 MobiDBLite consensus disorder prediction 117 137 - -
Sto2g2610 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 355 IPR044848 GO:0003700
Sto2g2610 450 Gene3D - 48 115 - -
Sto2g2610 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 112 IPR006447 GO:0003677
Sto2g2610 450 Pfam MYB-CC type transfactor, LHEQLE motif 143 164 IPR025756 -
Sto2g2610 450 Pfam MYB-CC type transfactor, LHEQLE motif 180 204 IPR025756 -
Sto2g2610 450 Pfam PIF1-like helicase 366 446 IPR010285 GO:0000723|GO:0003678|GO:0006281
Sto2g2610 450 MobiDBLite consensus disorder prediction 117 133 - -
Sto2g2610 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 114 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2610 Sto-Chr2 39847099 39852249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2610 92 359 G2-like Transcription Factor Family AT2G01060 62.454 2.62e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto2g2610 PIF1 2.8e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2610 - - tcc:18597377 485.723