LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto2g2601	ATGGTGATGCCGGGCTTCCGGTTCCACCCGACGGAGGAAGAGCTGGTGGAATTCTACCTCCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATTACTTTTCTTGATCTCTATCGCTATGACCCTTGGGAGCTTCCtgCCATGGCGGCGATTGGTGAGAAGGAATGGTACTTTTATGTGCCGAGAGACCGGAAGTATCGGAACGGGGATCGGCCGAACCGCGTGACTACTTCCGGATATTGGAAGGCGACCGGAGCCGATAGAATGATTAGAACCGAGAATTTTAGGTCAATTGGGCTCAAGAAAACCCTAGTTTTCTATTCCGGCAAAGCCCCCAAAGGCATCCGAACCAGCTGGATTATGAACGAGTATCGCTTGCCTCACCACGACACCCAACGGTATCAAAAGACTGAGATATCGCTTTGTCGAGTGTACAAGAGAGCCGGGGTAGAAGACCACCCGTCTCTCCCTCGGTGTCTTCCAAACCGGCCATCACGAGCTTCGTCGCACTCGTCAGACAAGACcaacaataataacaacaacaacaacaacatcgGTACGAAACCGAACACCCAAATGTTGTTTCATCCCCCGGACAACAACATGGGATTTCTGGGAGGACAACAGAGTAGCTCGCTCGAGAAGCTCgacaacaataacaacaatcatCTGACGAATGAAGTGGATGGTAACAAAAGCACGTCACCGTCAAATCATCGTCATAACGTCATCGATACCATCGTCACTACAACCCTCGGGCTTTCGAGGCAAATAATGAGCAACCCTTACTCTTCGAGTACCCCGTTGTTAGCTCCATTAGTGGGAGACGAAGCGTCATTACTAATTATGAAACAAGCCCAAGCATCATCCTCGAGCTTCTTCTTCCCGCCTccacaaccaccaccaccactaccgccgccgccgcctaaTACGACTACTAGTAATTCTAATTCTTCCGCTTCTAATAATGTCGTCGTGGACGATCTCAATAGGCTAGTGAGCTATAATCAGCTACAACACTTGTACAATAACACCAACGTTCCAACTAATTcaactcatcatcatcatcaccatcaattCTCTAATTTGCTTCTGCAACCGACGGCTCTGATCAATTCTTCTCTTCCATTGACAACAACGACAACACTATCCGCCGTCGCCGCCGCCACGGCCACCGATAGATTGTGGGATTGGAATCTCATCCCGGATGCAAGTAATAACCGAGAGTACAGCAACATGTCcttcaagtaa	1257	0.4455	MVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTQRYQKTEISLCRVYKRAGVEDHPSLPRCLPNRPSRASSHSSDKTNNNNNNNNNIGTKPNTQMLFHPPDNNMGFLGGQQSSSLEKLDNNNNNHLTNEVDGNKSTSPSNHRHNVIDTIVTTTLGLSRQIMSNPYSSSTPLLAPLVGDEASLLIMKQAQASSSSFFFPPPQPPPPLPPPPPNTTTSNSNSSASNNVVVDDLNRLVSYNQLQHLYNNTNVPTNSTHHHHHHQFSNLLLQPTALINSSLPLTTTTTLSAVAAATATDRLWDWNLIPDASNNREYSNMSFK	418

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto2g2601	418	Gene3D	NAC domain	11	152	IPR036093	GO:0003677\|GO:0006355
Sto2g2601	418	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 72-LIKE	2	412	-	-
Sto2g2601	418	ProSiteProfiles	NAC domain profile.	2	149	IPR003441	GO:0003677\|GO:0006355
Sto2g2601	418	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	2	412	-	-
Sto2g2601	418	MobiDBLite	consensus disorder prediction	296	314	-	-
Sto2g2601	418	MobiDBLite	consensus disorder prediction	293	324	-	-
Sto2g2601	418	Pfam	No apical meristem (NAM) protein	4	128	IPR003441	GO:0003677\|GO:0006355
Sto2g2601	418	SUPERFAMILY	NAC domain	3	148	IPR036093	GO:0003677\|GO:0006355
Sto2g2601	418	MobiDBLite	consensus disorder prediction	164	193	-	-
Sto2g2601	418	MobiDBLite	consensus disorder prediction	207	242	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto2g2601	Sto-Chr2	39668413	39670964	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto2g2601	1	176	NAC Transcription Factor Family	AT2G02450	86.364	1.49e-112	334

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Sto2g2601		NAM	1.8e-34	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto2g2601	-		-	gmx:100812779	419.853

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto2g2601	2	39668413	39670964	Sto2g2601	2	39668413	39670964	ECH

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