Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2601 ATGGTGATGCCGGGCTTCCGGTTCCACCCGACGGAGGAAGAGCTGGTGGAATTCTACCTCCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATTACTTTTCTTGATCTCTATCGCTATGACCCTTGGGAGCTTCCtgCCATGGCGGCGATTGGTGAGAAGGAATGGTACTTTTATGTGCCGAGAGACCGGAAGTATCGGAACGGGGATCGGCCGAACCGCGTGACTACTTCCGGATATTGGAAGGCGACCGGAGCCGATAGAATGATTAGAACCGAGAATTTTAGGTCAATTGGGCTCAAGAAAACCCTAGTTTTCTATTCCGGCAAAGCCCCCAAAGGCATCCGAACCAGCTGGATTATGAACGAGTATCGCTTGCCTCACCACGACACCCAACGGTATCAAAAGACTGAGATATCGCTTTGTCGAGTGTACAAGAGAGCCGGGGTAGAAGACCACCCGTCTCTCCCTCGGTGTCTTCCAAACCGGCCATCACGAGCTTCGTCGCACTCGTCAGACAAGACcaacaataataacaacaacaacaacaacatcgGTACGAAACCGAACACCCAAATGTTGTTTCATCCCCCGGACAACAACATGGGATTTCTGGGAGGACAACAGAGTAGCTCGCTCGAGAAGCTCgacaacaataacaacaatcatCTGACGAATGAAGTGGATGGTAACAAAAGCACGTCACCGTCAAATCATCGTCATAACGTCATCGATACCATCGTCACTACAACCCTCGGGCTTTCGAGGCAAATAATGAGCAACCCTTACTCTTCGAGTACCCCGTTGTTAGCTCCATTAGTGGGAGACGAAGCGTCATTACTAATTATGAAACAAGCCCAAGCATCATCCTCGAGCTTCTTCTTCCCGCCTccacaaccaccaccaccactaccgccgccgccgcctaaTACGACTACTAGTAATTCTAATTCTTCCGCTTCTAATAATGTCGTCGTGGACGATCTCAATAGGCTAGTGAGCTATAATCAGCTACAACACTTGTACAATAACACCAACGTTCCAACTAATTcaactcatcatcatcatcaccatcaattCTCTAATTTGCTTCTGCAACCGACGGCTCTGATCAATTCTTCTCTTCCATTGACAACAACGACAACACTATCCGCCGTCGCCGCCGCCACGGCCACCGATAGATTGTGGGATTGGAATCTCATCCCGGATGCAAGTAATAACCGAGAGTACAGCAACATGTCcttcaagtaa 1257 0.4455 MVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTQRYQKTEISLCRVYKRAGVEDHPSLPRCLPNRPSRASSHSSDKTNNNNNNNNNIGTKPNTQMLFHPPDNNMGFLGGQQSSSLEKLDNNNNNHLTNEVDGNKSTSPSNHRHNVIDTIVTTTLGLSRQIMSNPYSSSTPLLAPLVGDEASLLIMKQAQASSSSFFFPPPQPPPPLPPPPPNTTTSNSNSSASNNVVVDDLNRLVSYNQLQHLYNNTNVPTNSTHHHHHHQFSNLLLQPTALINSSLPLTTTTTLSAVAAATATDRLWDWNLIPDASNNREYSNMSFK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2601 418 Gene3D NAC domain 11 152 IPR036093 GO:0003677|GO:0006355
Sto2g2601 418 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 2 412 - -
Sto2g2601 418 ProSiteProfiles NAC domain profile. 2 149 IPR003441 GO:0003677|GO:0006355
Sto2g2601 418 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 412 - -
Sto2g2601 418 MobiDBLite consensus disorder prediction 296 314 - -
Sto2g2601 418 MobiDBLite consensus disorder prediction 293 324 - -
Sto2g2601 418 Pfam No apical meristem (NAM) protein 4 128 IPR003441 GO:0003677|GO:0006355
Sto2g2601 418 SUPERFAMILY NAC domain 3 148 IPR036093 GO:0003677|GO:0006355
Sto2g2601 418 MobiDBLite consensus disorder prediction 164 193 - -
Sto2g2601 418 MobiDBLite consensus disorder prediction 207 242 - -
Sto2g2601 418 MobiDBLite consensus disorder prediction 154 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2601 Sto-Chr2 39668413 39670964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2601 1 176 NAC Transcription Factor Family AT2G02450 86.364 1.49e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto2g2601 NAM 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2601 - - gmx:100812779 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2601 2 39668413 39670964 Sto2g2601 2 39668413 39670964 ECH