Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2599 ATGGAAAGCATACCGCACCCAATACCTAGAACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGACGAGCTGGGTTGATTAAGGCCCTCACTACTGATGTGGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAAGAGAACTTGTGTCTGTATGGATATCCAAATGAAACGTGGGAAGTGAATTTGCCTGTTGAGGAAGTTCCTCCTGAACTTCCTGAGCCAGCATTAGGCATAAACTTTGCCAGGGATGGGATGCAAGAGAAGGACTGGTTGTCACTGGTTGCGGTTCACAGTGACTCATGGCTGCTTGCTGTGTCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTCCAGATGATAAATGATCTCCCAACCATATTTGAAGTTGTTACAGGAAGTGCTAAGCAATCGAAGGATCAATCAGCTGCTCACAACAATGGTAGTAATAGCAAAAGCAAATCATCAAGTGGAAAGGGGTCCTCCCAATCTGACGCCAAGGGAGTGAAGATGTCTCCACCACccaaagaagaggaagaaagtggagaagaagatgaagaagatgatgaacaAGGGGCAACATGCGGGGCATGTGGTGACAATTACGGCACTGATGAGTTCTGGATCTGTTGTGATGTGTGCGAGAGATGGTTCCACGGCAAGTGTGTGAAAATCACTCCTGCCAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGCTGCAGTAACAAGAGGGCTAGAGTTTAG 765 0.4405 MESIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSNSKSKSSSGKGSSQSDAKGVKMSPPPKEEEESGEEDEEDDEQGATCGACGDNYGTDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2599 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Sto2g2599 254 MobiDBLite consensus disorder prediction 142 174 - -
Sto2g2599 254 MobiDBLite consensus disorder prediction 142 199 - -
Sto2g2599 254 MobiDBLite consensus disorder prediction 184 199 - -
Sto2g2599 254 SMART PHD_3 200 248 IPR001965 -
Sto2g2599 254 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 251 - -
Sto2g2599 254 CDD PHD_AL_plant 201 250 IPR044104 -
Sto2g2599 254 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Sto2g2599 254 PANTHER CPG BINDING PROTEIN 1 251 IPR045104 GO:0006355|GO:0042393
Sto2g2599 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Sto2g2599 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Sto2g2599 254 Pfam PHD-finger 201 250 IPR019787 -
Sto2g2599 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2599 Sto-Chr2 39646176 39650513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2599 1 251 Alfin-like Transcription Factor Family AT1G14510 80.876 3.72e-134 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto2g2599 Alfin 1e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2599 - - gmx:100807826 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2599 2 39646176 39650513 Sto2g2599 2 39646176 39650513 ECH