Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2598 ATGTCagaaatgcgggtttctgatcCGAGCAAGCTTCATCTGAAGAAGAAGGAGCTCACTCAAATTCGTAAAGCTGCTCGTGTACTTAGGGATCCTGGTACTACATCCTCGTGGAGGTCACCTCTCAATTCCTCAAGATCTATGGCCGCTGCTTCTGCATGGAAGAGCAAATTGGAGAATCAAAGTAGAAGTTTCAATGGCAATGGGAGAGAGAAGAGCGTGTTCTTGTATAATTGGAAGAATCACAAATCATCCAGCGAGAAGAGTGCGGCAGCAGCCAAAAACGTAGAAGAAgaggacgaagaagaagaagaagaagatgacgatgatgatgaaTCTTCTTCATCTCTTCTCGGAAGCTACGAGGATAGCTTGAGCGACGCTCGGAATGGCTGCGATTCGAAGAGCGATTCTTACTTGGGAGTTGGGAATCGTTCTTCTGTTTTCCGGTGTAGAGATGCGAATCCGAGTCTTGTTTCGTCTGCGAGAAGAACAGTGAGCAATGTAAAGAAAAAGAgcgagaaaaagaaaatcaacacTCGTTTGGACAATTTATCGAAGTATCAGCAACGAGAAACCAGTTTAGGTAGAAAGTTAGTTAGTTCCAAGACATACCTAGAGAGGCATTCTTCAATGGCTTATCATAATAATAGCCGGGATGATTCAATAGAACAGTCTGATGATACTGAAGATTACTGTAATTCTGAGGATTTAAGGCGAATTTCAGGAGCATCTCCATTGCTGCTTAAACTCAAGAATAAGAATTGGTCTCGTTCTTCCTCTAAGTTCTTGAGAAGTAGCAGGAAAGAGGACTCTTCTTATTCTTATAGTACTCCTGCATTATCAACTAGTTCTTATAATAGGTATGGAGGTTACCATAATCCCAGTACCGTTGGATCTTGGGATGCCACTACAACCTCTAtgaatgatggtgatgatgaggtAGATGATCGTTTGGAGTCACAAGGCGGGCGAGGATGTGGGATTCCTTGCTATTGGTCCAAGAGGACTCCAAAACATAGAGGGATGTGTGGGAGTAGTTATTCTCCTTCATTTTCTGACACTTTGAGGAGGAAAGGAAGTAGCTTACTTTGTGGAAATCAGAGTATTTATCCTAGACACCGGAGATATTCCTCATTGAGCTCCAACAGGTGGAGGGTTTCTTCAAGGGGTGCTCAAGGTGTTCTTCCATTGCTCACTAGTAGTGGTGATGTTAGAGGAGGTTCATCTGTAGGAACTGGAAGGAGTGATGATGAACTTTCTACTAACTTTGGGGAACTTTATCTTGAGGGATTAAGCCGGTTGGATGGAAGAAGATGGTCATCAAGTTGTAGGAGTCAAGAAGGATTGGAGATTGTGGCTGTAGATGCAGAAGGGGATGAGGATGACACACCAGAAAATAGTAGGAGTTTCAGTCAGAAGTATAGGCCTACTTCCTTTGGTGGATTGATTGGCCAAAATATTGTGGTTCAGTCGCTTATGAATGCTGTTTTGAGGGACAGAATTGCTCCTGTTTATCTTTTCCAAGGGCCCCGTGGTACTGGTAAAACATCAACAGCCAGAATTTTTGCTGCTGCCTTGAATTGTATAGCTCCTGATGCTAGTAAGCCTTGTGGCTATTGCAGGGAATGCACTGATTTCATTTCTGGCAAGAGCAGGGATCTATTTGAAGTTGATGGAACCAATAAGAAAGGGATTGATAGAGTTGGATATCTATTGAAAAGGCTATCAGTAGAGTCATCTTTAGCCTCCTCACGGTACACAGTTTTTGTGATAGATGAGTGTCACTTGCTACCTTCTAAGACATGGctagcttttctcaagtttctgGAAGAACCACCTCAGCGAGttgtatttatgtttataacAACTGATCTTGATAATGTACCAAGAACAATACAGTCTCGTTGCCAGAAGTacctttttaacaaaattaaagaagGGGATATCGTGGCCAGATTGAGGAAAATATCTGCTGAGGAAAACCTGGATGTTGAACCGGATGCACTGGACCTTATTGCTATAAATGCAGATGGTTCACTTCGAGATGCAGAAACTATGTTAGAACAGCTCAGTTTACTGGGAAAAAGAATTACAGCTTTGCTTGTCAATGAACTTGTGGGTGTGGTTTCTGATGAAAAATTACTGGAGCTTCTGGAGTTAGCAATGTCATCCGAGACTTCTGAAACAGTGAAAAGAGCCAGAGAAGTGATGGACTCTGGAGTTGATCCTATGATTTTGATGTCTCAAATGGCTAGCCTCATTATGGACATCATTGCTGGATCATATACTGTCATTGACGCCAAACCTGGTGATTTGTATTTTGGTGGGCGAAGTTTGAATGAatcagagttggagagattaaaACATGCTTTGAAGCTTCTCTCGGATGCCGAGAAACAGCTGAGGACCTCTAGTGAACGCTCGACATGGTTCACAGCAACTCTGTTACAGCTTGGTTCAACGCCTTCTTCAGATTTTTCGCTGTCAAGCAGCAGCAGGAGGCAAAGCTACAAGAGTTCGGAAGATGATCCTTCAAGTGCTTCACAAGAAGTTACTGCTAACAAGCAGAAGTCAGATGTTCGATATATGCCTCGGAGGTCAACATCACTAGTATCTCAACAAAAAACAACAAATGGAAATTCCAGACATCAAAGGGATATATCACCGAAGATAGATGACTTTAGCTTGAGTTCAAAGCCATCAAACAGTCCAGTTGGGGATGATGTTGGCACACCCATCTCATCTGATGATCTTATTGTTGGGAATATGATGTTAAGATGCGTTAATTCAGGGAAGTTATATGATATCTGGGCATGTTGTATAGAGAGGTGTCACTCCAAGACACTAAGGCAGCTGCTACACAGCCATGGAAAGCTTGTATCCATATGTGAAGTTGAAGCACCTAATTCAGATATTCTTTCATCCTGGTTTTTCCATCTAGTTCTGTCTTCTCCACCTTATTATAAGTTAAAACTAAACTTTTGCCCTGTTCTATTTACCCTACGTATCTGTAGAAACTCTCTTAATATGATTCTTCTTGCAGGTGTTCTGGTTGCATATGTTGCATTTGGGGATCGAGATGTTAAACTTAGAGCTGAAAGGTTTTTGAGCAGTATCACAAATTCCATGGAAATGGTACTTAGGCAGAATGTGGAGGTCAGAATTATCCACTTGCCAGAAGGTGAAGGCGAAAATCTACCAGGTAAGCAGGCAGGTTCAAAAATGGCAAGTGCGAAGGAAAAAAGAGTAGGCCATGCAAATGGTGCAGATGCTTATTCCAGTTTTCCTCCTTTGCTGGATGGAAGCTTTCAAGCTCCCACTGATTCATCGGATTTTATGGCAGAGGGAGATGGTGTGAGAGTGAATGGACAGGAAATCCCTACCCAGAGGATTGAGTCTATTATTCATGAACAGAGGCTGGAAACTGCCTGGTTACAGGCTGTAGAAAAAGGTTCCCCCGGATCATTGACATGTGTGAGACCCGAAAAGAATCAGGTCCTGCCTCAGGAAAATATATACTGCAAAGACCCAATGGACTCAATAGATTCAACAAAGTTTTCATCTAAACATTTGGAAGATGACCTAAATCAGGAAGTAAAAGTTTTGAATGTTAAAAATGGAAGGGTCCTACAGAAGGGTCAGATTAGTAGAAGGTTAGACCGATGTCCTATGTCCCCAAGTTTATTGCATGATAGCAGTTTAGCAACAAGTTCCAGCAAAGACAATCTGGGATATGAATCAGGCTCAGGACTTGGAGGTTGCAATGGATTTTTGTGTTGGAATAACTCCAAACGTAGAAGGGTGAAGGTAAGAGGAACCCCAGTTGGAGCACATAAAGTTGGACACTTTTCATTATTTGGTGCACATGACAATAAAAATGGTGATATGAATAGGGATTCAATTGTTCTAGTTTCtagggtttggactttggatATTGTTGGTCTACTTGCATTGACGCTGAAAAATCAGTGA 3975 0.4013 MSEMRVSDPSKLHLKKKELTQIRKAARVLRDPGTTSSWRSPLNSSRSMAAASAWKSKLENQSRSFNGNGREKSVFLYNWKNHKSSSEKSAAAAKNVEEEDEEEEEEDDDDDESSSSLLGSYEDSLSDARNGCDSKSDSYLGVGNRSSVFRCRDANPSLVSSARRTVSNVKKKSEKKKINTRLDNLSKYQQRETSLGRKLVSSKTYLERHSSMAYHNNSRDDSIEQSDDTEDYCNSEDLRRISGASPLLLKLKNKNWSRSSSKFLRSSRKEDSSYSYSTPALSTSSYNRYGGYHNPSTVGSWDATTTSMNDGDDEVDDRLESQGGRGCGIPCYWSKRTPKHRGMCGSSYSPSFSDTLRRKGSSLLCGNQSIYPRHRRYSSLSSNRWRVSSRGAQGVLPLLTSSGDVRGGSSVGTGRSDDELSTNFGELYLEGLSRLDGRRWSSSCRSQEGLEIVAVDAEGDEDDTPENSRSFSQKYRPTSFGGLIGQNIVVQSLMNAVLRDRIAPVYLFQGPRGTGKTSTARIFAAALNCIAPDASKPCGYCRECTDFISGKSRDLFEVDGTNKKGIDRVGYLLKRLSVESSLASSRYTVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFMFITTDLDNVPRTIQSRCQKYLFNKIKEGDIVARLRKISAEENLDVEPDALDLIAINADGSLRDAETMLEQLSLLGKRITALLVNELVGVVSDEKLLELLELAMSSETSETVKRAREVMDSGVDPMILMSQMASLIMDIIAGSYTVIDAKPGDLYFGGRSLNESELERLKHALKLLSDAEKQLRTSSERSTWFTATLLQLGSTPSSDFSLSSSSRRQSYKSSEDDPSSASQEVTANKQKSDVRYMPRRSTSLVSQQKTTNGNSRHQRDISPKIDDFSLSSKPSNSPVGDDVGTPISSDDLIVGNMMLRCVNSGKLYDIWACCIERCHSKTLRQLLHSHGKLVSICEVEAPNSDILSSWFFHLVLSSPPYYKLKLNFCPVLFTLRICRNSLNMILLAGVLVAYVAFGDRDVKLRAERFLSSITNSMEMVLRQNVEVRIIHLPEGEGENLPGKQAGSKMASAKEKRVGHANGADAYSSFPPLLDGSFQAPTDSSDFMAEGDGVRVNGQEIPTQRIESIIHEQRLETAWLQAVEKGSPGSLTCVRPEKNQVLPQENIYCKDPMDSIDSTKFSSKHLEDDLNQEVKVLNVKNGRVLQKGQISRRLDRCPMSPSLLHDSSLATSSSKDNLGYESGSGLGGCNGFLCWNNSKRRRVKVRGTPVGAHKVGHFSLFGAHDNKNGDMNRDSIVLVSRVWTLDIVGLLALTLKNQ 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2598 1324 Pfam DNA polymerase III, delta subunit 485 645 - -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 33 69 - -
Sto2g2598 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 692 IPR027417 -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 864 885 - -
Sto2g2598 1324 Pfam DNA polymerase III subunits gamma and tau domain III 700 760 IPR022754 GO:0003887
Sto2g2598 1324 MobiDBLite consensus disorder prediction 210 231 - -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 82 137 - -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 822 909 - -
Sto2g2598 1324 CDD HLD_clamp_pol_III_gamma_tau 645 708 IPR045085 -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 25 69 - -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 822 857 - -
Sto2g2598 1324 Gene3D - 462 643 IPR027417 -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 895 909 - -
Sto2g2598 1324 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1016 1239 - -
Sto2g2598 1324 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 227 967 - -
Sto2g2598 1324 Coils Coil 86 106 - -
Sto2g2598 1324 CDD AAA 484 642 - -
Sto2g2598 1324 PANTHER PROTEIN STICHEL-LIKE 1 227 967 - -
Sto2g2598 1324 PANTHER PROTEIN STICHEL-LIKE 1 1016 1239 - -
Sto2g2598 1324 SUPERFAMILY post-AAA+ oligomerization domain-like 716 817 IPR008921 GO:0003677|GO:0006260
Sto2g2598 1324 SMART AAA_5 502 664 IPR003593 -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 96 116 - -
Sto2g2598 1324 Coils Coil 781 808 - -
Sto2g2598 1324 MobiDBLite consensus disorder prediction 297 321 - -
Sto2g2598 1324 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 470 819 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sto2g2598 1324 Gene3D - 647 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2598 Sto-Chr2 39630302 39638834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2598 466 760 Core DNA Replication Machinery Family AT1G21690 24.342 4.33e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2598 - - adu:107471079 1607.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2598 2 39630302 39638834 Sto2g2598 2 39630302 39638834 ECH