Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2595 ATGGAACTTTCTAGTGAAGAAGGAGAAATCCCAATCCCAATAAACACTACTATTTCTTCTTCTAATTATGGTGGTGTGGAGGAGCATGGTAATGGGCATAGGCATGAGGAGCATGGGAACATTCCccaccaccatcaccatcatcatcatcataatggCTCCTCTGTTGCAGCAGCAGCACCACCTGCCCTACAATTGAAGGGCCAAGTACCCTACAACAAGAACAGCAAGAAAGTGGTGAAGTATAGAGAGTGCCTTAAGAATCATGCAGCCTCCATGGGAGGGAATGCCCTTGATGGGTGTGGTGAATTCATGCCTAGTGGAGAAGAAGGTACCCTAGAGGCCCTAACTTGTTCTGCTTGCAATTGTCACAGAAATTTCcacagaaaagaagtagaaggcCAAGAATTCATCAAATTTGGCACCCAAAAGTTCATCCTAGGCCCTAATCATCATAatcatcataatcatcatcttcatcttcatcacaAGACTAGTACTGGAGGAGAGCCTCTTGTAGGGTACCCTACAACTTCAGGTACTACTCCtcttactactactactacaatTCTGCCCTCAAGAGCTGTACCACCCCATATGATCCTGCCCTACAATGTAGGGTCCCTATCCCTCCCCTCAGAatgtgatgaagaagaagaagaagaaggtggtgGTATGATTAGGCCTATTGTGGCATTTGGATCATCACAGATAGGGAAGAAGAGGTTCAGGACAAAGTTCACACAAGAACAGAAGGAGAAGATGCTGGGATTTGCTGAGAGAGTTGGGTGGAAGATTCAGAAGCAAGAGGAATCTGTTGTGCAACAATTCTGCCAAGAGATTGGAGTCAAAAGAAGAGTCCTCAAGGTTTGGATGCATAATAATAAGCACAACTTTGCCAAAAGGTTGGAACTCGTGACCTTTAGGTCCTCTAATAGTGTTGCTTAA 948 0.3882 MELSSEEGEIPIPINTTISSSNYGGVEEHGNGHRHEEHGNIPHHHHHHHHHNGSSVAAAAPPALQLKGQVPYNKNSKKVVKYRECLKNHAASMGGNALDGCGEFMPSGEEGTLEALTCSACNCHRNFHRKEVEGQEFIKFGTQKFILGPNHHNHHNHHLHLHHKTSTGGEPLVGYPTTSGTTPLTTTTTILPSRAVPPHMILPYNVGSLSLPSECDEEEEEEGGGMIRPIVAFGSSQIGKKRFRTKFTQEQKEKMLGFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNFAKRLELVTFRSSNSVA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2595 315 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 240 296 IPR006455 -
Sto2g2595 315 SUPERFAMILY Homeodomain-like 234 301 IPR009057 -
Sto2g2595 315 MobiDBLite consensus disorder prediction 10 26 - -
Sto2g2595 315 MobiDBLite consensus disorder prediction 39 53 - -
Sto2g2595 315 Pfam ZF-HD protein dimerisation region 80 132 IPR006456 -
Sto2g2595 315 MobiDBLite consensus disorder prediction 1 58 - -
Sto2g2595 315 Gene3D - 232 301 - -
Sto2g2595 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 131 IPR006456 -
Sto2g2595 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 302 - -
Sto2g2595 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 33 302 - -
Sto2g2595 315 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2595 Sto-Chr2 39579778 39580894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2595 79 302 ZF-HD Transcription Factor Family AT2G02540 53.165 2.50e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto2g2595 ZF-HD_dimer 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2595 - - lja:Lj0g3v0058889.1 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2595 2 39579778 39580894 Sto2g2595 2 39579778 39580894 ECH