Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2587 ATGTTTGCTGATTTTTCCTCTAGTTTTCTGGAAATAGAGGAGAAAACAGAGCTGAAAGTGAAAAAGGCAGATCATTGCAGGAGCAGAGCACGTGATCAAGAATTCTCTGCTGTTTTAAAGATTATTTGTGTGGTTCTCCAACTGCATTTGTATCGCTTTAGAACAGAATTTAAAGTCAGAGTGCTAGATTCTTCTGCTGTTTTGAAGATCATTTGTGGTTCTCTTATGGAATTTATGGCTTCAAATCAGACGTCCATCGGAAAACTTGCAGGGGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTAGTCACTCTTCCTCGTGAAGGAGAGCGGGTTTATTATTTTCCACAAGGTCACATGGAACAGGTTGTTGATTATCTGATTCCTAACCAACTCGAGGCATCTATGCATCAGGGATCTGAGCAGCAAATGCCTTCCTTCAATCTGCCTTCAAAAATTTTATGCAAAGTGGTCAATGTTCATCTTCGGGCTGAAACTGATACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGTTCCAGATCAAAGTGAGGTGTCGAGCCCAGATGATCCTTTGCCAGAACCTTCTAGGTGCACAGTTCACTCATTCTGTAAGACACTTACTGCGTCTGACACTAGCACCCATGGGGGATTTTCTGTTCTGCGAAGACATGCGGATGAATGTCTGCCACCCTTGGATATGTCTCAGCAGCCTCCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCTAGGCGCCACTTACTGACTACTGGTTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGAGGTGAAAATGGGGAGCTGCGTGTTGGAGTTAGGAGGCTTATGAGACAACAAAACAACATGCCATCTTCTGTTATTTCTAGTCACAGCATGCATCTTGGTGTTCTGGCCACTGCGTCTCATGCCATTGCCACTGGCACACTGTTTTCTGTATTTTACAAGCCCAGGACAAGCCGATCAGAGTTTATTGTGAGTCTCAACAAGTATCTTGAAGCTCGGAATCACAAGTTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTGGGTGTTGAAGAAAATAACTCACCTGTCTGGGCTAATTCTGAGTGGCGCTCATTAAAGGTGCAATGGGATGAACCATCTTCAATCCTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGAATACCACTCCTGCAAACACCCAACCAACTCAAAGAAACAAGAGGACACGACCTCCCGTTCCTTCAACAGTGCCTGATTCTTTGCATGGTGgtTCATTAAGTATTTGGAAACCACAAGTCAAATCTCAACCTTTCACTCATCCTGATGCTCAACATGGACGGGACCTCTATTCATCATCCAAGTTTAGTTCTACGGCAGCTAACTTTCTCGGTATTGGTGGGAGTAATCCTGTGGGGGTTGTTTCTAACAATTCAACACATTGGAACAATAGGGTGGAGAACTCTACTGAGTCGGTAGCCCCTAAAGAGTCTGGTgaaaagagacaaaatactgGGAGTGGCTGTAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAACGTTGAAGAACGAATGCGCACAGTCACATTGTCGTCTGGAAGGGCGGGAGATGATAGGTCTGTTCCATCTTTAGATGCCGAGTCTGACCAGCATTCCGAACCATCAAACATCAATCGCCCTGACGTTCCATCAGTAAGTTGTGATGCTGAAAAATCTTCTCTGCAGTCTCCCCTAGAATCACAGAGCAGGCAAATAAGGAGCTGCACCAAGGTCCACATGCAAGGAATGGCTGTCGGTAGGGCTGTGGATTTAAATCGGATTGATGGATATGAGGCTCTGCGCAAGAAATTTGAGGATATGTTTGAGATCAAGGATGAGCTCACTGGATCCAATAAAAAATACCAGGTTGTTTACacagatgatgaagatgatgtgaTGATGGTTGGAGATATTCCATGGAaTGAGTTCTGTGGTGCTGTGAGGAAAATCTTCATATACACAGCAGAGGAGGTGAAGAAGCTTTCTCCGAAAGCGATACTTTCAATTGGTGAAGAAGCTAAAACAAGCAAGGCAGATTCTGAAGTAGCAGTCAATACTGAGGACCAAGAGCAGTCATCTTTTGTAGGCTGGCGGGCATGGCAGCATCGTCTACCGGCTTGCCGCAACATGAAAAGTAAACTGCCGTCTGATCTTGCCAtaggcttagggtttttgggggTTTTGAATGGGCTACTAGCATGGAGAATGGGATGCCTTTGTTCATATTTCCTTGTGTCTATGGCTTTTGTCTTTGTTTATTTACTTGTTCTGCTTTACATTCTTAATGTGATCAAAGCTATGAAGAAGCTCAAGTTATGgtcaagaaagaaaaggaaaaagaagaccCACCATGAACCTTActaccctcctcctcctcctcctcctcttccatGTCACCATTATTGCTGCTCTCGCACCGAGCCATCGGCTCCACCCTTACCGGCATGGCTCGAACCCGGGCGAAACTATGGGACCTTCTTGGCACCCAATAGTACTACTAGTGTGGAGCCTATGCCAGAATTAGTGACATTATATGAAAGTCAAGAAGCTCAGGTTCCTCCACCTCATCAGGAGATTATTGTGGAACCTAATAAGCAAGTGTATCATCAAACtagctcatcatcatcatcatcctatCAGCAATATATGGTTTCATCCATTATTTCAGAAGAAGCTGTTTATGGGATTCCAATTGCTCAGACAAGTCAAAGAAAGAGATCAAGAGGGGTATTTGGATGTGTTTTTAGTTTTGGTGCTTATGTGTTTCGCTGCTTATTCCCTTGTTTTCACATTCGAGAATAA 2991 0.4166 MFADFSSSFLEIEEKTELKVKKADHCRSRARDQEFSAVLKIICVVLQLHLYRFRTEFKVRVLDSSAVLKIICGSLMEFMASNQTSIGKLAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQVVDYLIPNQLEASMHQGSEQQMPSFNLPSKILCKVVNVHLRAETDTDEVYAQITLLPVPDQSEVSSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKFSVGMRFKMRFEGDEVPERRFSGTIVGVEENNSPVWANSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTPANTQPTQRNKRTRPPVPSTVPDSLHGGSLSIWKPQVKSQPFTHPDAQHGRDLYSSSKFSSTAANFLGIGGSNPVGVVSNNSTHWNNRVENSTESVAPKESGEKRQNTGSGCRLFGIQLLENSNVEERMRTVTLSSGRAGDDRSVPSLDAESDQHSEPSNINRPDVPSVSCDAEKSSLQSPLESQSRQIRSCTKVHMQGMAVGRAVDLNRIDGYEALRKKFEDMFEIKDELTGSNKKYQVVYTDDEDDVMMVGDIPWNEFCGAVRKIFIYTAEEVKKLSPKAILSIGEEAKTSKADSEVAVNTEDQEQSSFVGWRAWQHRLPACRNMKSKLPSDLAIGLGFLGVLNGLLAWRMGCLCSYFLVSMAFVFVYLLVLLYILNVIKAMKKLKLWSRKKRKKKTHHEPYYPPPPPPPLPCHHYCCSRTEPSAPPLPAWLEPGRNYGTFLAPNSTTSVEPMPELVTLYESQEAQVPPPHQEIIVEPNKQVYHQTSSSSSSSYQQYMVSSIISEEAVYGIPIAQTSQRKRSRGVFGCVFSFGAYVFRCLFPCFHIRE 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2587 996 SUPERFAMILY CAD & PB1 domains 638 713 - -
Sto2g2587 996 MobiDBLite consensus disorder prediction 524 556 - -
Sto2g2587 996 Pfam B3 DNA binding domain 211 311 IPR003340 GO:0003677
Sto2g2587 996 Gene3D - 208 313 IPR015300 -
Sto2g2587 996 SUPERFAMILY DNA-binding pseudobarrel domain 200 340 IPR015300 -
Sto2g2587 996 Gene3D - 631 725 - -
Sto2g2587 996 Pfam AUX/IAA family 633 726 IPR033389 -
Sto2g2587 996 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 94 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto2g2587 996 CDD B3_DNA 209 311 IPR003340 GO:0003677
Sto2g2587 996 MobiDBLite consensus disorder prediction 443 463 - -
Sto2g2587 996 ProSiteProfiles PB1 domain profile. 636 729 IPR000270 GO:0005515
Sto2g2587 996 ProSiteProfiles B3 DNA-binding domain profile. 211 313 IPR003340 GO:0003677
Sto2g2587 996 MobiDBLite consensus disorder prediction 597 635 - -
Sto2g2587 996 SMART B3_2 211 313 IPR003340 GO:0003677
Sto2g2587 996 PANTHER AUXIN RESPONSE FACTOR 1 94 722 - -
Sto2g2587 996 MobiDBLite consensus disorder prediction 579 635 - -
Sto2g2587 996 Gene3D - 374 446 - -
Sto2g2587 996 MobiDBLite consensus disorder prediction 443 476 - -
Sto2g2587 996 Pfam Auxin response factor 337 419 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2587 Sto-Chr2 39495704 39505195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2587 79 761 B3 DNA Binding Superfamily AT1G59750 67.873 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto2g2587 AUX_IAA 9e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2587 K14486 - gmx:100793224 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2587 2 39495704 39505195 Sto2g2587 2 39495704 39505195 ECH