Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2538 ATGGAGACACAGTTCAATTACAGTCTCTTCGAGAGGCGTCCCATCCTCAAGTCTAAGACTCCCGTCGTTAAATGGGTTAAAGAATGGGTTCCCCAGGATGTTGTAGCAACGGGAGGGAAGTGCACGCTTTTCAGATGGGTAAGAGAGGATACCATAAAGGCCATAAAGGATAAGGAAAAAGAACCATCTGTTCCTGAACCAGAACCAGAGCCAACTACTGAAGTACTCTTTCTCTGCAGCTATGAAGGCTGTGGAAAGACTTTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATTCACGGAGAGAGACAATATGTTTGTCTCTATGAGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAAAGACATAATCTCATTCATACAGGGGAGAGGGATTTTGTATGCCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAGGTCTCACATGAAAACACATTCACAAGAGAATTATCATATTTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATCACGTCACATCATGAAAAGAACGGGTCTGTGGatgtgaatgtgaatgtgaCAAAGCATACTCCGCCTTCCGAGAAGCCGACGAAAGCTTCAAAACCTTCTGGAGGGGTTTATTCTTCTGCATCATCTGATCGCCCTTTCGCTTGTCCTTATGAAGGCTGTGAAAAAGCCTATATCCATGAATACAAGCTTAAACTCCATCTGAAGAGGGAGCATCCTGGGCATTCTGATGAAAATATACTAGAGAATGCTCAGGTTAATAATGCTGACAATGAAATGGATGATGCAAGTGATCAAGATGCCTATGGTGTGAAACGATCAAATGGTAGGAGTCAGAAGCGGAGCAAGACCAAACCAAATTTGAAGCTGCCTCCTTCCAAAATTGCGCGACGCAAAGCGTCAGCTCCTTCTCCTGCTGCCTCATTGAAGGCGATTAAGAAACCTTGGCCGGTGAAAGAAGAAACTTTCGAGGAAGAAGACAGCGAAGAAACAGAAGAGGAGGATCGCGACAATGCTGAAGATGGTTGGAGATATGCTGGAAacaatgaagaagatgatgaggaaACAGAGTATGAAGACTGA 1140 0.4263 METQFNYSLFERRPILKSKTPVVKWVKEWVPQDVVATGGKCTLFRWVREDTIKAIKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCLYEGCGKKFLDSSKLKRHNLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHITSHHEKNGSVDVNVNVTKHTPPSEKPTKASKPSGGVYSSASSDRPFACPYEGCEKAYIHEYKLKLHLKREHPGHSDENILENAQVNNADNEMDDASDQDAYGVKRSNGRSQKRSKTKPNLKLPPSKIARRKASAPSPAASLKAIKKPWPVKEETFEEEDSEETEEEDRDNAEDGWRYAGNNEEDDEETEYED 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2538 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 263 IPR013087 -
Sto2g2538 379 MobiDBLite consensus disorder prediction 194 227 - -
Sto2g2538 379 Gene3D Classic Zinc Finger 134 161 - -
Sto2g2538 379 Gene3D Classic Zinc Finger 77 102 - -
Sto2g2538 379 SMART c2h2final6 106 130 IPR013087 -
Sto2g2538 379 SMART c2h2final6 233 258 IPR013087 -
Sto2g2538 379 SMART c2h2final6 166 190 IPR013087 -
Sto2g2538 379 SMART c2h2final6 77 101 IPR013087 -
Sto2g2538 379 SMART c2h2final6 136 160 IPR013087 -
Sto2g2538 379 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Sto2g2538 379 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Sto2g2538 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Sto2g2538 379 MobiDBLite consensus disorder prediction 341 356 - -
Sto2g2538 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Sto2g2538 379 Gene3D Classic Zinc Finger 162 191 - -
Sto2g2538 379 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Sto2g2538 379 SUPERFAMILY beta-beta-alpha zinc fingers 121 163 IPR036236 -
Sto2g2538 379 MobiDBLite consensus disorder prediction 274 379 - -
Sto2g2538 379 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 1 379 - -
Sto2g2538 379 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Sto2g2538 379 MobiDBLite consensus disorder prediction 188 230 - -
Sto2g2538 379 PANTHER BNAA03G13270D PROTEIN 1 379 - -
Sto2g2538 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Sto2g2538 379 ProSitePatterns Zinc finger C2H2 type domain signature. 235 258 IPR013087 -
Sto2g2538 379 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Sto2g2538 379 Gene3D Classic Zinc Finger 103 133 - -
Sto2g2538 379 SUPERFAMILY beta-beta-alpha zinc fingers 228 256 IPR036236 -
Sto2g2538 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Sto2g2538 379 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Sto2g2538 379 SUPERFAMILY beta-beta-alpha zinc fingers 151 192 IPR036236 -
Sto2g2538 379 Gene3D Classic Zinc Finger 205 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2538 Sto-Chr2 39015504 39019912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2538 10 365 C2H2 Transcription Factor Family AT4G06634 63.342 5.70e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto2g2538 zf-C2H2 0.00038 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2538 - - qsu:111997563 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2538 2 39015504 39019912 Sto2g2538 2 39015504 39019912 ECH