Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2503 ATGGAGAAGTACGAGCTGGTGAAGGATATAGGATCTGGGAATTTCGGGGTGGCTAGGCTTATGCGCAACAAAGAAACCAAGGAGCTCGTTGCCATGAAGTACATTGAACGAGGGCAcaagATTGATGCTAATGTGGCGAGGGAAATCATAAACCATAGATCTCTTCGCCATCCGAATATAATTCGGTTCAAGGAGGTGGTATTGACTCCCACTCATCTTGCAATAGTTATGGAGTATGCTGCAGGTGGGGAGCTCTTTGAGCGGATATGCAATGCTGGAAGGCTAGATATTTCTTCCAGCAACTCATCTCAGGAGTTAACTACTCAAATCTGCCACCGAGACTTGAAGCTAGAGAACACCTTATTGGATGGCAGCCCTGCACCACGTCTGAAAATTTGTGATTTTGGTTATTCTAAGTCATCTCTGCTTCATTCAAGGCCTAAATCAACAGTTGGAACTCCAGCCTACATTGCACCAGAGGTTCTTTCGCGTAGAGAATATGATGGAAAGTTGGCGGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAAGATCCCAAGAACTTCAGGAAAACCATAAATCGAATTATGGCTGTTCAATACAAGATCCCAGACTATGTTCACATATCTCAAGACTGTAGGCACCTCCTATCTCGAATTTTTGTGGCAAGTCCAGCCAGGAGGATTACCATCAAGGAAATCAAGTCCCACCCATGGTTTCTAAAGAACTTGCCTAGGGAATTGACAGAAGTGGCTCAAGCTGTGTACTATAGAAAAGGAAACCCAACCTTCTCTCTTCAGAGTGTAGAAGACATCATGAAAATTGTTGAGGAGGCCAAGACTCCAGCCCCAGCTTCCAGTCAAACCCATCCAACTGATGATAAACTTCCTAGAGATAATTGGTTGCAACATGCCAGTGCACATGAAAACTTTTCACGTCAAAACAGGTTCTTGACTTCAAATTTTCTGTTCTCATTGCCAGCTCAGAAGCCTTGCTCTGAAGAAGCCGCATGTGGGAGATTTGTAGTCagtcaaaatcaaaatattcaAACTTTGCAGAGAACACAAGTTGAGAAGGCTTGGCGTGCTCTTTCAAGTCTACAGAATTCTTGCAGGGACTATGTCAAACCTGGAAAAACTGTACAAATTAGTCATCCTCTTCATGCAGACAAGAGAACAAATTCTCTGTCAAAAAGCTCCGAGAATGATAAATTTTCTACAAATTCACACAATAATAAAGTCTTCAGTGAAAACAATACCAAATCTAATCAATATTTTCCATCAAGTAATCCCAGAGCTGAAAATGGAGGGGATGGTTTGAGGTGTTCTGATCAAATAAGAACTCCTACAGTCAACACTCATTATTCTCGAGTTTTGGATGATTCAGTGAACAATCATACTAAATATACTGCTAAAATTAATGAGCCTACAAATTCTAGGGTTAATGACAttgatgacgatgatgatgtCATACTTGAGAACATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGAGTTGCACTCCTCAACCATCAATAACCAAGTTCCCTCCTATTTCTCCAACTGTTGATGCAAACAGTTTTGCTAGACAAGGGGAAAATAGTTTGCCTGCAGAGTTGTGCTTGGATTGCAGTCATGGCTATAAGGTAGGGCTTTGTCCTGAAGCAGCAAGCCATTTGCAGGAATGGAAGGACAATCTAATTGCTATCTCCAATGAACTGCTTGACAATATTGACAACCTCAGTTCTACACAGATAGCAAACCTTCGCCAAGAAAGGTCACAGCTAAATAAGCAAATTCAGCAGCTTGAAAGATATATTCATTCTAGTAAGCTTGATGAGGAAAGACAGAAGTCACATCTTTCTGCGTCCACAGCACCTCCTACATCTTTCCAGTTTGAAACACCACATCAGACTGTCCTCAGGAGTGGACCATTGGGATATGATGACCAGGTTTATATGAGTAATGGGCCTTGTGGATCTTCATTCCAGTCATTTTCAATTTCTTCTGTAGATAACTATGGCATGTCATCTGGTCCAATGGAGAGAGAAACATTCATTCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAATGACCAAAATTTCCCTTGGACGAAAAAGCTGGAGGCCAATAATAAAAAGGTATTTGGAAATCACTCATTCCGGCCCAATCAAAGAGAAGTCATTAATGCCACAATGAGTGGATATGATGTTTTTGTCTTAATGCCAACAGGTGGAGGGAAGAGTCTGACCTATCAGCTCCCTGCTCTTATTTGTCCAGGCATAACACTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATTTGTTGCAGGCGAATATACCTGCTGCTTACTTAAGTTCCAATATGGAATGGACTGAACAACAGGAGATCCTTAGAGAAATTAATTCTGACTATTGTAAATACAAGTTGTTATATGTGACACCAGAAAAGGTTGCAAAGAGTGATGTTCTTCTGCGACAATTGGAGAGTTTACACTCACGTGAGTTACTTGCCAGAATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGACATGATTTTAGACCTGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAGTACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTCGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACAAAAAAGTGTTTGGAGGACATTGACAAGTTCATTAGGGAAAATCATTTTGATGAATGTGGCATTATTTATTGTCTTTCTCGAATGGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGCGGCCACAAAGCTGCTTTTTATCATGGTAGCATGGATCCTGCTCAACGAGCCTTTGTTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATTTGTGCTACAGTTGCATTTGGAATGGGTATTAATAAGCCTGATGTCCGCTTTGTAATTCATCATTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGTACCAGCTGAATTTCAAAATGTCTCTACTAACATGTATAGTACTATTGTTTATGGTACTGCTGGCTCACTTAAACAGCTGTCATTTTGCCTTCAGGAGTGTGGAAGAGCCGGTAGAGATGGTCAACGTTCATCCTGCGTATTATATTATAGCTATAGCGACTATATACGAGTTAAGCACATGATTAGTCAAGGAGTAATAGAGCAAAGTCCCATGACATCTGGATACAATCGTTCAAATTTGACATATTCAGGGAGGATACTGGAAACTAACACTGAAAACCTTTTGCGAATGGTAAGTTATTGTGAAAATGATGTTGATTGCCGACGACTTCTGCAGCTTGTTCATTTTGGGGAGAGGTTTGATTCAGAAACCTGTAAGAAAACATGTGACAATTGTTTGAAGATCAAAAGTTTCATTGAGAAGGATGTTACAGAGATTGCAAAGCAATTGGTTGAACTAGTTAAGCTTACGGGGCAGAGGTTCTCATCATCTCATATATTAGAAGTGTACCGTGGTTCCTTGAATCAGTTTGTGAAGAAAAACCGGCATGAAACTATTCGCTTTCATGGTGCTGGGAAGCATCTAAGTAAAGGTGAGGCTTCCCGTGTTTTGCATCATCTTGTTACTGAAGATTTTCTTGTGGAGGaagtaaagaaaagtgatattTATGGATCAGTCTCATCAGTATTGAAGGTAAATGAGCCCAAAGTCCGTAATCTGTTTTTTGGTGGCCAGAGAATTATATTAAGATTTCCTTCCTCGGTAAAACCTTTAAAACCGGTGATATCTGATGCAACTCCAGCTAAAGGTTCTCTGACATTTGGGAAGCAGAATCTTCCTCAAAATGACAGTTCTGCCCAGCCTCAAACTGAAGTGGACTTGAATCTTTCAGCCAAGTTGTACACAGCTCTACGGATGCTACGGACAGCTCTTGTTAAAGAAGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCTACGCTGCAGCAGATAAGCAAGAGAGTTCCCAGAACGAAGGAAGAACTCCTTGAGATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGAGATAGGTTACTAGAAACCATTGAAACTACCATAAAGGAATATTACAAGCTGGATAAGAACAACAGCGGAAGTAATGAGAGCACTGACTCTGCAAAAAGGAGACGAGAATCAAATGGAAACCCTACTGCAAATGTGGACGATGAAGACTTAACCAGAAGTACCGGTCGTTCAAAGAAAAGAACAGTAAAGAGACTGAACAAAAAAATTGTGGTATATGATTCTGCAGAGGAAGATTTTTACAGAGATTGCTTAGATGATGACTTAGATTTTGACAATATAGAAAATGCTGCATTGGATCAAATAAATCGTAGGAACACTGATGGAAGAGTCCTTCCTGCATGGACAACAACATCTTGA 4572 0.4016 MEKYELVKDIGSGNFGVARLMRNKETKELVAMKYIERGHKIDANVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRLDISSSNSSQELTTQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHISQDCRHLLSRIFVASPARRITIKEIKSHPWFLKNLPRELTEVAQAVYYRKGNPTFSLQSVEDIMKIVEEAKTPAPASSQTHPTDDKLPRDNWLQHASAHENFSRQNRFLTSNFLFSLPAQKPCSEEAACGRFVVSQNQNIQTLQRTQVEKAWRALSSLQNSCRDYVKPGKTVQISHPLHADKRTNSLSKSSENDKFSTNSHNNKVFSENNTKSNQYFPSSNPRAENGGDGLRCSDQIRTPTVNTHYSRVLDDSVNNHTKYTAKINEPTNSRVNDIDDDDDVILENIDVDQIVENYQSSCTPQPSITKFPPISPTVDANSFARQGENSLPAELCLDCSHGYKVGLCPEAASHLQEWKDNLIAISNELLDNIDNLSSTQIANLRQERSQLNKQIQQLERYIHSSKLDEERQKSHLSASTAPPTSFQFETPHQTVLRSGPLGYDDQVYMSNGPCGSSFQSFSISSVDNYGMSSGPMERETFIPKIIEVNYIEGSGDKRWNDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSSNMEWTEQQEILREINSDYCKYKLLYVTPEKVAKSDVLLRQLESLHSRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPSTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQVPAEFQNVSTNMYSTIVYGTAGSLKQLSFCLQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGVIEQSPMTSGYNRSNLTYSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGERFDSETCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSLNQFVKKNRHETIRFHGAGKHLSKGEASRVLHHLVTEDFLVEEVKKSDIYGSVSSVLKVNEPKVRNLFFGGQRIILRFPSSVKPLKPVISDATPAKGSLTFGKQNLPQNDSSAQPQTEVDLNLSAKLYTALRMLRTALVKEAGEGVMAYHIFGNATLQQISKRVPRTKEELLEINGIGKAKVSKYGDRLLETIETTIKEYYKLDKNNSGSNESTDSAKRRRESNGNPTANVDDEDLTRSTGRSKKRTVKRLNKKIVVYDSAEEDFYRDCLDDDLDFDNIENAALDQINRRNTDGRVLPAWTTTS 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2503 1523 Pfam Helicase conserved C-terminal domain 947 1045 IPR001650 -
Sto2g2503 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1106 IPR027417 -
Sto2g2503 1523 MobiDBLite consensus disorder prediction 393 453 - -
Sto2g2503 1523 SMART ultradead3 736 939 IPR014001 -
Sto2g2503 1523 Gene3D - 931 1181 IPR027417 -
Sto2g2503 1523 Gene3D - 1186 1296 IPR036388 -
Sto2g2503 1523 Gene3D Transferase(Phosphotransferase) domain 1 82 259 - -
Sto2g2503 1523 ProSiteProfiles Protein kinase domain profile. 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2503 1523 CDD SF2_C_RecQ 931 1095 - -
Sto2g2503 1523 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Sto2g2503 1523 MobiDBLite consensus disorder prediction 1433 1447 - -
Sto2g2503 1523 MobiDBLite consensus disorder prediction 410 442 - -
Sto2g2503 1523 Coils Coil 598 618 - -
Sto2g2503 1523 SMART RQC_2 1188 1299 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sto2g2503 1523 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Sto2g2503 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1069 1230 IPR027417 -
Sto2g2503 1523 Gene3D HRDC domain 1336 1424 IPR044876 -
Sto2g2503 1523 CDD DEXHc_RecQ 728 930 - -
Sto2g2503 1523 Gene3D - 704 930 IPR027417 -
Sto2g2503 1523 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2503 1523 ProSiteProfiles Rhodanese domain profile. 963 1005 IPR001763 -
Sto2g2503 1523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 923 IPR014001 -
Sto2g2503 1523 SUPERFAMILY Protein kinase-like (PK-like) 2 286 IPR011009 -
Sto2g2503 1523 MobiDBLite consensus disorder prediction 1423 1463 - -
Sto2g2503 1523 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 732 1045 IPR004589 GO:0004386|GO:0006310
Sto2g2503 1523 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1077 1490 - -
Sto2g2503 1523 PANTHER DNA HELICASE RECQ FAMILY MEMBER 414 1045 - -
Sto2g2503 1523 Pfam RecQ zinc-binding 1097 1179 IPR032284 -
Sto2g2503 1523 SMART helicmild6 973 1086 IPR001650 -
Sto2g2503 1523 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 414 1045 - -
Sto2g2503 1523 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 1077 1490 - -
Sto2g2503 1523 ProSiteProfiles HRDC domain profile. 1340 1422 IPR002121 GO:0003676
Sto2g2503 1523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1127 IPR001650 -
Sto2g2503 1523 Pfam HRDC domain 1344 1412 IPR002121 GO:0003676
Sto2g2503 1523 Pfam RQC domain 1185 1300 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sto2g2503 1523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Sto2g2503 1523 Pfam DEAD/DEAH box helicase 742 910 IPR011545 GO:0003676|GO:0005524
Sto2g2503 1523 SMART serkin_6 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2503 1523 SMART hrdc7 1340 1422 IPR002121 GO:0003676
Sto2g2503 1523 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 862 871 IPR002464 -
Sto2g2503 1523 SUPERFAMILY HRDC-like 1343 1416 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2503 Sto-Chr2 38705562 38720749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2503 3 254 CBL-interacting serine-threonine protein kinases AT5G35410 39.630 1.06e-49 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sto2g2503 Pkinase 1.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2503 K10901 - gmx:100800006 1672.91