Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2456 ATGGATACAAGACCACGTCCTCGCGCAATCGTCAATGGTGTTCGAAGAACGAGAACCTTCCACTACTTCTGGTGCCAAACTTGCCAACGCGCCGTGAGAATCccatcatcaccatcaccaaaccctaactcctCTTTTTGCCCCTTTTGCTCCCATCAATTGCGCTACGAGCTCGACATCACACGGCCAAGACTCCTCGCGAATCTTCCCAACAACCTAGATCCTTCCCCCGCAACTCAACTGATGAACAGCTTAGCCCTGATCCTCGACCCATCAATGAGGGAGCGAAACACCAATCTCGACCCAACCACTCGATGGGTCGAAGAGAACGACGACGACGGGACCTGGATCGCCCTCCGATTCACGAGACCAAATCAGAGACTCGTCAACGCCGGCGGTCACGACGCAAACGCAAACGCGACGGTCCCGAACAACCGTCGGCCGGGGCCACCTCCGGCGGCGGATTCCGCCATAGAGAGGCTACCGACGGTGAAACCGACGGAGATCCAACTAGCGAGTGATCCTAATTGCGCTATATGTAAAGACGAGTTTAGGGTTGAGATGGAAGTGAAGGAATTACCGTGCAAGCATTTCTACCATTCAGATTGTATTGTGCCTTGGCTTCGAATCCACAATACGTGCCCTATCTGCCGCCATGAGATAGaagttggaggaggaggaggagggagaGATTCTTCTTTGAATTCGCATATGCAAGATGAATTGAACTTTGAACATTTgaatgggcttgggcttgggcttgaagAAGCTGGGTATACTTTGAATTCGGTTTGGAGCCAGATTGCTTCTTTCAGACCATTTCGTGCGTTTTGGGATTGGACTCAGAGGTATTACTTTGATTTCCAGGAAAATCATGGTGGAGCAGTCATTTCACAGGAAAAACCTAAATCAAAATAA 918 0.4553 MDTRPRPRAIVNGVRRTRTFHYFWCQTCQRAVRIPSSPSPNPNSSFCPFCSHQLRYELDITRPRLLANLPNNLDPSPATQLMNSLALILDPSMRERNTNLDPTTRWVEENDDDGTWIALRFTRPNQRLVNAGGHDANANATVPNNRRPGPPPAADSAIERLPTVKPTEIQLASDPNCAICKDEFRVEMEVKELPCKHFYHSDCIVPWLRIHNTCPICRHEIEVGGGGGGRDSSLNSHMQDELNFEHLNGLGLGLEEAGYTLNSVWSQIASFRPFRAFWDWTQRYYFDFQENHGGAVISQEKPKSK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2456 305 CDD RING-H2_RNF126_like 177 218 - -
Sto2g2456 305 SMART ring_2 177 217 IPR001841 -
Sto2g2456 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 223 IPR013083 -
Sto2g2456 305 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 280 - -
Sto2g2456 305 MobiDBLite consensus disorder prediction 131 154 - -
Sto2g2456 305 SUPERFAMILY RING/U-box 157 222 - -
Sto2g2456 305 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Sto2g2456 305 Pfam Ring finger domain 176 218 IPR001841 -
Sto2g2456 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2456 Sto-Chr2 38316879 38319152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2456 1 282 C3H Transcription Factor Family AT1G68180 34.483 1.02e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2456 K11982 - gmx:100793656 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2456 2 38316879 38319152 Sto2g2456 2 38316879 38319152 ECH