Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2404 ATGGGCAAACTTCATTCATGTGTTTTCATGTTCTTATTGTCTTGCTTCGTGCTTTTTATAACTTGGAGTAAAACAAATATCACCACTGATGAATCTGCTCTTCTTGCTTTCAAATCTTCTATCACCTCTGATCCGTATGATTTCTTGGCTAATTGGTCAGTCTCTTCATCTCCATGTGATTGGGTTGGTGTCACTTGCAATGCTCGTCATGGAAGGGTTCATTCCTTGAATCTGGGTGACATGGGTCTCAATGGTACCATATCTCCTCATTTGGGAAATCTCTCATTTCTTGTTGAACTTGATCTTAGTTTTAACAACTTTCATGGTCATTTGCCGAAAGAGTTGGAAATTGATCTTAGCCATAATAATTTGGGTGGTAGTCTCCCATCAAATATATGTGATGGGCTTCCAAAACTTGAAGTACTATATTTGGACCAGAATAATTTTTCTGGAGAGATACCATCTGTTTGGCATCAATGCAAAGAATTGAGAAGATTACAATTAGATGGATTTGATGGTGGATACATACCAAGTGACATTGGAAATTTGACCAACCTCCAATACTTATATCTTGGTGACAACAACTTGAAagGACTTGTACCTAAGGAGATAGGCAATCTCAACAAACTTGAGGTGTTAGATTTGTCAAACAACTATCTAAGTGGACCTATATCATCCAACATTTGCAACATTTCAACATTGATGTGGTTGAATTTTGGATATAATCATCTCTCTGGACCTATTCTCCCAAATATAGGAAGTAGCCATGCCAACCTGAAGGTATTGTATCTAGAATCAAATCAATTTACTGGAAACATCCCAAAGAGCATATCCAATGCTTCAAAGCTTATTCATGTAGAACTAGGCTTGAATAAATTTAGTGGAATTATTCCCAATATACTTGGAAATTTAACCAACTTGATCAATTTAAGGTTAAATGGGAATGATTTGAATGGATTGATTCCTGTTACATTTAATAAGCTACAAGATCTTCAATTTTTGGATCTTAGTAGCAACAAATTGAAAGGCCATGTCATAGATGGACTTTGCCAAATTAGAAGTTTAAGTGAGCTGCATCTAGCCTATAATATGTTTCAAGGATTGATTCCGAGGTGCCTTGAGAATATTACTTCTTTGCaaaagttggatttgagttctaACAAATTACTTTCTCATATACCCAATTCTATTTGGAGTCTCAAAGATATCATTGTGCTAGATTTATCCTCCAATGCCTTGAACGGAACAATTCCACTTGAGATTTCGAGCTTGAGAGCACTTACATTGTTGAACTTATCAAACAATCAAATTTCAGGAAACATTCCTTCAACCATTGGTGGCTTACAAACTTTACAAAATTTATCTTTAGAGAATAACAGATTGAATGGGAAAATTCCTGAATCGCTTGGTGGTATGATAAGCATAGAGTTCTTGGATCTTTCCCAAAATTATTTGTCTGGAGTGATTCCAAAGTCCTTAGAGTCACTTGTCCATCTCAAATATATTAACCTTTCCTATAATTTATTGCATGGAGAAATTCCAAGTGGTGGGCCTTTTAGAAACTTTACAGCAGAATCTTTTGTGATGAATGAAGATCTTTGTGGGAAGCCCCAACTACGAGTCAAACCATGTAAAAAAGGAAGCGAGCAGAGATCAACTAAAGACATGCTTTTGATCAAATGCTTATTGCCTATCATGTTCGCAGTGATTATAGTTGCTTCATGCATAATTTTTCTGAAACATAAGAGAAATTATGTTAATGATTCAACTAATAGGAATTTATTGAATTTGGAGATGCTAGCTAGGGTATCCTACTATGAACTTCTACAAGGAACAAATGGATTTTATGAGTGCAACTTTCTTGGACAAGGTAGTTTTGGATCTGTATACAAAGGTATTCTTTCAAGTGGACAGATGGTTGCagttaaaatatttaacttaGACTTGGAAGAAGCTTCGAGGAGTTTTGATACTGAATGCACTGCCCTTTGCAATTTGCGTCATCGCAATCTCGTCAAGATCATTAGCAGTTGTTCAAATGTtgattttaaatctttaataaTGGAATTTATGCCAAATGGAAGTCTTGAAAGCTGGCTATATTCTCATAACTACTGCTTAGATATCTTGCAAAGGTTGAACATAATGATTGATATAGCATCAGCATTGGAGTATCTTCATCATGGTTCTTCTACACCAATAGTTCATTGTGACGTAAAACCAAGCAATGTTTTGTTGGACGAAAATATGGTAGCTCATCTTAGTGATTTTGGAATTTCGAAACTATTAAGTGAAGAGAAAATGCAAATTTATACCAAGACCATTGCTACAGTTGGCTATATGGCGCCAGAGTATGGATCTGAAGGAGTTGTTTCTATGAAAGGAGATGTATATAGTTATGGTATCATGCTGATGGAAGTGTTTACAAGGAAGAAGCCAACAGATGATATATTTGTCGAAGGGAGACCATCGTCAAATTGGTAA 2484 0.3514 MGKLHSCVFMFLLSCFVLFITWSKTNITTDESALLAFKSSITSDPYDFLANWSVSSSPCDWVGVTCNARHGRVHSLNLGDMGLNGTISPHLGNLSFLVELDLSFNNFHGHLPKELEIDLSHNNLGGSLPSNICDGLPKLEVLYLDQNNFSGEIPSVWHQCKELRRLQLDGFDGGYIPSDIGNLTNLQYLYLGDNNLKGLVPKEIGNLNKLEVLDLSNNYLSGPISSNICNISTLMWLNFGYNHLSGPILPNIGSSHANLKVLYLESNQFTGNIPKSISNASKLIHVELGLNKFSGIIPNILGNLTNLINLRLNGNDLNGLIPVTFNKLQDLQFLDLSSNKLKGHVIDGLCQIRSLSELHLAYNMFQGLIPRCLENITSLQKLDLSSNKLLSHIPNSIWSLKDIIVLDLSSNALNGTIPLEISSLRALTLLNLSNNQISGNIPSTIGGLQTLQNLSLENNRLNGKIPESLGGMISIEFLDLSQNYLSGVIPKSLESLVHLKYINLSYNLLHGEIPSGGPFRNFTAESFVMNEDLCGKPQLRVKPCKKGSEQRSTKDMLLIKCLLPIMFAVIIVASCIIFLKHKRNYVNDSTNRNLLNLEMLARVSYYELLQGTNGFYECNFLGQGSFGSVYKGILSSGQMVAVKIFNLDLEEASRSFDTECTALCNLRHRNLVKIISSCSNVDFKSLIMEFMPNGSLESWLYSHNYCLDILQRLNIMIDIASALEYLHHGSSTPIVHCDVKPSNVLLDENMVAHLSDFGISKLLSEEKMQIYTKTIATVGYMAPEYGSEGVVSMKGDVYSYGIMLMEVFTRKKPTDDIFVEGRPSSNW 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2404 827 Pfam Leucine rich repeat 378 437 IPR001611 GO:0005515
Sto2g2404 827 Pfam Leucine rich repeat 182 220 IPR001611 GO:0005515
Sto2g2404 827 Pfam Leucine rich repeat 450 509 IPR001611 GO:0005515
Sto2g2404 827 SMART LRR_typ_2 472 495 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 136 160 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 207 231 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 424 448 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 352 375 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 183 206 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 376 400 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 496 520 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 94 118 IPR003591 -
Sto2g2404 827 SMART LRR_typ_2 304 327 IPR003591 -
Sto2g2404 827 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Sto2g2404 827 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Sto2g2404 827 Gene3D Ribonuclease Inhibitor 172 255 IPR032675 -
Sto2g2404 827 SUPERFAMILY L domain-like 52 389 - -
Sto2g2404 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Sto2g2404 827 SUPERFAMILY Protein kinase-like (PK-like) 597 817 IPR011009 -
Sto2g2404 827 Pfam Protein kinase domain 619 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2404 827 Gene3D Phosphorylase Kinase; domain 1 577 690 - -
Sto2g2404 827 SMART serkin_6 615 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2404 827 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515
Sto2g2404 827 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 463 - -
Sto2g2404 827 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 117 816 - -
Sto2g2404 827 SUPERFAMILY L domain-like 336 515 - -
Sto2g2404 827 SMART LRR_sd22_2 376 392 - -
Sto2g2404 827 SMART LRR_sd22_2 328 351 - -
Sto2g2404 827 SMART LRR_sd22_2 207 233 - -
Sto2g2404 827 SMART LRR_sd22_2 256 282 - -
Sto2g2404 827 SMART LRR_sd22_2 448 471 - -
Sto2g2404 827 SMART LRR_sd22_2 183 204 - -
Sto2g2404 827 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Sto2g2404 827 ProSiteProfiles Protein kinase domain profile. 615 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2404 827 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Sto2g2404 827 Gene3D Ribonuclease Inhibitor 256 553 IPR032675 -
Sto2g2404 827 Gene3D Transferase(Phosphotransferase) domain 1 691 826 - -
Sto2g2404 827 PRINTS Leucine-rich repeat signature 331 344 - -
Sto2g2404 827 PRINTS Leucine-rich repeat signature 376 389 - -
Sto2g2404 827 Gene3D Ribonuclease Inhibitor 26 171 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2404 Sto-Chr2 37856676 37869221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2404 29 818 Receptor kinase-like Gene Family AT3G47570 37.168 1.46e-169 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2404 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2404 - K13420 vvi:100240972 729.554