Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2296 ATGGAAGATCAAGCAGTTTTAGGTGGTGGAGCACTTGTTAgtagaggaagagaagaagaggaagacgagTTTTGCAGTTGTTGTGAAGATGAAGAAGTATGGAAAGAAACTGAGCAGTTGGTGGTGGAAGAGTTGAAGGATGATTCTGTTGAATCTTCGGTGAAATTGTTCTTCAAGGGCTTGTCTATAGCTGGGGTTGAAAATTCCAGTTCTGGGTATTCTGGAATCGGAGTGTTCATGGAAAGACCTTCTGGTCTTCCTGTTATTCGAGTCCAGAAAAAGCTTGATTTTTATGCGGAGGAGCCATTAGCTGATTACTTGGCTCTCATTGATGGCTTGCTAGAAGCTTTGAAGAACAACGTCCGGAGAATTTATGCTTTTACAGATTCTGATTTGTTGTACGATCAGGTAACATTTGAGAAAAATCTTGAGATGCCGCTTTTCATAGCTCTTCGAGAAAGGGTTCTGGAGCATGCAAATAATTTTGAAGCTTTTGTCCTGAATCTTGTTCCGAGTATTGATCTTGAGCAGCCGCTGCATTTGGCCAAAGTAGCTATTGGGCTTGTCACTTTTCCTTCAAATGGTGAGAAAGTACTTGAAAGCTGTTCTATTTGCTGTGAGGATAAGCCCTTGCCAATAATGATCACTATGAAATGTTCGCATAAGTTTTGTTCACATTGTTTGAGGGCCTATGTTGATGGAAAAATACAATCTTGTCAAGTCCCCATAAGATGCCCTCAACCAAGATGTAAATATTACATCTCTATGACAGAGTGCAGATCTTTTCTTCCATTTGGCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATGTTCTCCATTCAGATAGAATTTACTGTCCTTTTCCAAATTGTTCAGTTCTCCTTGATCCGCGTGAATGTTTATCGGCTAGGGCTAGTTCATCTAGCCAATCAGAAAACTCTTGTGTCGAGTGTCCTGTTTGTCAGAGGTTTATCTGCGTGGATTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAGTACCAAAATCTACCAGAGGAGGAGAGAGATTCTTCTGACATTACATTGCATCGCCTTGCTCAAAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTCGGATGATTGAGCTCACCCAAGGATGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCTGAATACCGGGACAGCCAACAGACCTGTCAGTGTGTTTTCTGGGACGAAGACAATTCAGAGGACTCGGTGACTCACTCTCTTCAAGAATCCGAGCAATGGGCATGGGAGACTTTCAATTCTCTTCCCATGATCATGGATGCATACTCAGACCAGGAACGATCACAGCTCGCGCTTATTCAAAGGTTCCTAGCCGGGGGTTTCAGTCTGAGTGACCATCATCCTTACCAATCTCCTCCCCGCTGTACAGACTCCTACGTTGACACCATGAAGGATCTCCATCAGCTTCCATGGCTTGAAAGATTTGTGTCTGTTATAAGTGATAACTACTATGAAGATTATATTCAGTAA 1551 0.4191 MEDQAVLGGGALVSRGREEEEDEFCSCCEDEEVWKETEQLVVEELKDDSVESSVKLFFKGLSIAGVENSSSGYSGIGVFMERPSGLPVIRVQKKLDFYAEEPLADYLALIDGLLEALKNNVRRIYAFTDSDLLYDQVTFEKNLEMPLFIALRERVLEHANNFEAFVLNLVPSIDLEQPLHLAKVAIGLVTFPSNGEKVLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKIQSCQVPIRCPQPRCKYYISMTECRSFLPFGSFESLEKALAEANVLHSDRIYCPFPNCSVLLDPRECLSARASSSSQSENSCVECPVCQRFICVDCEVPWHSSMSCEEYQNLPEEERDSSDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDSQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDTMKDLHQLPWLERFVSVISDNYYEDYIQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2296 516 SUPERFAMILY RING/U-box 354 418 - -
Sto2g2296 516 Gene3D - 338 463 - -
Sto2g2296 516 Pfam IBR domain, a half RING-finger domain 280 341 IPR002867 -
Sto2g2296 516 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 -
Sto2g2296 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 282 IPR013083 -
Sto2g2296 516 SUPERFAMILY Ribonuclease H-like 69 171 IPR012337 -
Sto2g2296 516 SMART ibrneu5 351 410 IPR002867 -
Sto2g2296 516 SMART ibrneu5 269 341 IPR002867 -
Sto2g2296 516 ProSiteProfiles Zinc finger RING-type profile. 202 249 IPR001841 -
Sto2g2296 516 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Sto2g2296 516 Pfam Reverse transcriptase-like 65 171 IPR002156 GO:0003676|GO:0004523
Sto2g2296 516 SUPERFAMILY RING/U-box 200 278 - -
Sto2g2296 516 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Sto2g2296 516 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 515 IPR031127 GO:0004842|GO:0016567
Sto2g2296 516 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 515 - -
Sto2g2296 516 Gene3D - 55 188 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2296 Sto-Chr2 36773758 36777795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2296 31 401 C3H Transcription Factor Family AT2G19610 28.278 4.39e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2296 - - gmx:100783040 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g2296 2 36773758 36777795 Sto2g2296 2 36773758 36777795 ECH