Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2255 atgaaagaaggaagaaagggaGGAGCAGCGTCGCCGTGTGCGGCGTGCAAGCTGCTCCGGCGACGATGCGCTCAGGACTGCGTGTTCGCCCCTTATTTTCCGGCCGACGAGCCTCACAAGTTCGCCAACGTTCACAAAGTCTTCGGTGCCAGTAATGTCAACAAGATGCTTCAGGAGCTTCCAGTGCATCAAAGAGGAGACGCAGTGAGCAGTATGGTGTATGAGGCTAATGCAAGAGTGAGAGACCCTGTGTATGGCTGTGTTGGAGCCATCTCTTCTCTTCAGCAACAAATCGATGTGCTTCAGACCCAATTGGCTCTAGCCCAGGCTGAGGTTGTGCACCTCAGGGTTAGCCAGACGGCTAACCTCTCCAACAATGGGCTTAGCCCAACCAACAGCGGGTCCCCACCGCCGTCCAAGCCCATCTTCGACATGGACATGATGGTGGACCACTCCGCCTATGGGGACTCAATGTGGAGGAGCAGTGGTGGTTACGACGACGGCGACGATGATGGCGAAAGGAGCTGTGGCGGAGGCGGCAATGGGCCAACTGAATCCCCTGAACACCAGCCTCGTAGCGAGGGGCACGTCGATGATGATCTCCTTCTGCGTCGGCTTCTTCTCGTCTCGGATCGCGATCAGGTAGCTCCGACCCACCCACCCGATCCATCCGGCGATGTAGAGGAACAGGATCCCCGGGGTGATGAACTCGCCCCAGTGCCTCTGGTCTCCGCTCACGATCAGGTGTGGCAGCCCGTCGGCCCCGCACAGCAGCCCTTGCTTCCCGTAGTTGTCGAACCTCCTCTTGGTCTTCTCGATCGTCGCCTTGATCGCCAGCGCCGGCGCGCTGTCCGGCGCGTACTGCTTCAGCGACGACTCCAGCTTCTTGATCTGCTGCTTCTCCCGCTTCGTGAACTGCTTCGACTCCTTGCACGGGGTGAGGCCGGAGATGTCGGCGGCGGCGGGGAGCGGCGCGGAGAGGAGGATGGAGGAGAGCGCCAGCGCGGCGGAGAAAGCCTGAAGCGACGACGACGGCGAGGAGGAGGATGCATTCTCcgacgaagaagaagagcagACGATTGTGGGTTTGAGGAGCTTTGGGGTGGAGAATTGGGGAAGGCCTAA 1125 0.5822 MKEGRKGGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVSQTANLSNNGLSPTNSGSPPPSKPIFDMDMMVDHSAYGDSMWRSSGGYDDGDDDGERSCGGGGNGPTESPEHQPRSEGHVDDDLLLRRLLLVSDRDQVAPTHPPDPSGDVEEQDPRGDELAPVPLVSAHDQVWQPVGPAQQPLLPVVVEPPLGLLDRRLDRQRRRAVRRVLLQRRLQLLDLLLLPLRELLRLLARGEAGDVGGGGERRGEEDGGERQRGGESLKRRRRRGGGCILRRRRRADDCGFEELWGGELGKA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2255 374 Coils Coil 91 111 - -
Sto2g2255 374 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Sto2g2255 374 MobiDBLite consensus disorder prediction 318 338 - -
Sto2g2255 374 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 3 132 - -
Sto2g2255 374 MobiDBLite consensus disorder prediction 211 238 - -
Sto2g2255 374 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 132 - -
Sto2g2255 374 MobiDBLite consensus disorder prediction 122 145 - -
Sto2g2255 374 MobiDBLite consensus disorder prediction 159 196 - -
Sto2g2255 374 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Sto2g2255 374 MobiDBLite consensus disorder prediction 317 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2255 Sto-Chr2 36476670 36482940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2255 1 159 AS2 family AT1G31320 73.529 1.55e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto2g2255 LOB 8.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2255 - - tcc:18596365 271.937