LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto2g2252	ATGGCAGGATTTTTTTCTGGGGAGTCGGTGCATGCTGGAACATCTGTTGGCAGTTCTACAGACAAGCAAGGTGAAGAATTAGGTCGCTGGTATATGTCTAGGAAAGAAATAGAGGAATATTCACCATCAAGAAGGGATGGAATTGACTTGAAGAAAGAGACATATCTTCGCAAGTCATACTGCACATTCTTACAGGATTTAGGCATGAGGCTTAAAGTCTCCGACTCCAATGCCGACCGCtcttccttctcctcctcccgattgtctcgctcctcttcttcGTTGTCGCGCCTCTCTCGCGCTCTCAGTATTCGATCCTCCAAGATCTCGTTTCCTCGCCGGAGAGAATTTTTCGGCAGCGAAACTGAATTTCCTGGCGAGGCAAATTCGGAAGCGAAAATTTTGACTATGCCAGCTAAGACTTGCACTATTTGCTTGGGTGACTTGAAAATTGGGCAAGGCCGAGCTATCTTTGTGGCAGAGTGTTCCCActctttccatttcaattgcattgcatccaATGTCAAGCATGGAAGCCAAGTCTGTCCCATATGTCGCTCCAAATGGAAAGAAATTCCATCTCAAGCTCCAGCTCCAACCAATGTTCCTGCTCCTCACCACGATCAAAACAGGGGAAGGGCCAGAGCACCACCATCAGTACCTTCACCACCTACCCTCTTGCCATCCTTCTCGATGCGCGAGCCTACTCGCTTCTCTGATGATGAGCCTCTTTCTGTCCCAGCAGCTTCTGCAGCGGACCATACTTCATCTGCACCCAGTGTTGTGGCTGTCAAGTGCTTTACTGAATATCCTGTTGTCTCTGCATTTGAAGCTCATCCAGAATTTGCTGTTCTTGCTAGCATTCGTGCACCGGTACTTTTGCAACGTGATCGAGCTCCTATTGACCTTGTTACTGTGCTTGACATGAGTGGTAGCATGGCTGGATCAAAGCTTTCACTCCTCAAGCATGCTGTTCATTTTGTCATTCAGAACTTGGGGTCCTCGGACCGGCTTTCGATAGTTGTTTTCTCCTCAACAGCTCACAGAATTTTGCCACTTAGAAGGATGAATGAGAGTGGCCGAGCCGAAGCAGCCCTTACCATCAGTTCTCTTTTAACAGATGGTGGAACCAACATTCTTAATGGACTCAAAAAAGGACTTCGTGTCCTTGAAGAACGACGAGAGCGAAACCCAGTTTCTAGCATTATACTCCTCTCTGATGGCAAGTCTCAACCTTCGGTAACTCAGCCATTGACACTACCTCAATTGCCTGGAACCACTGCTATTCCTGTCCACTCTTTTGGCTTTGGTACTGATCATGATTCTACTGCATTGCATTCTATATCTGATTCATCTGGTGGCACCTTTTCCTTCATCGAATCCATTGGCATGGTGGGAAATGCCTTTGCAAGGTGCATTGGTGGTCTTCTGAGTGTTGTGGCTCAGGAGCTACAACTCACAGTCAAAACACTAACACCAGGGGTGCAAATTACCTCAATTCGCTCGGGGCGATACAACAGCGAAATCTGTGATGAGGGTAGGCGAAGTGTGATCGATATCGGTAACATGTATGCAGAAGAAGAGAAGGGATTTCTTTTGTACCTATCAATTCCAGCTGCCCCAACCAATGAAGGAGGAGAAATGGAGACCAAGACTCCATTACTTGACATCACATGCCAATACAAAACTTCAGGAGCATCTGAGGAGGACCTAGTCAAGGTTGAGGGTGAAAGGGTAGAGATACAGAGATCATCAGAGGCTTCACCACAAATGACGGTGTCGTTGGAGGTCGATAGACATCGGAATAGAGTCTTGGTGGCCGAAGGTATAGCAGAAGCTCAGAGGTTGGCTGAGAGGGGAGACTTGCAGGGAGCAAAAGCTTTGCTGGAAGCTAAAAGAGCAATACTATTAGCCTCAGCCTCTGCCACTGCAGGTGATGCTATCTGCACTTGGCTTGATGCTGAACTGAGAGAAACTAAGGAGAGGATGGAAAGCAGGGAACTATATGAACATACTGGAAGGGCTTATGTTCTCTCAGGATTGAGCTCACATTCATGGCAGAGGTCCACAACAAGAGGAGACTCTATAACTCAGACATTTGTCTGTGGTGATCCGGCGGCGGTGCCGCCGAGTGGACCGATCGGGTATGAGACGCCTTCGATGGTGAGTATGGTAAGAATGTCACAGAATCTTAGCATAACTGGACCATGGCCTTCACCAAGAGcctga	2229	0.4612	MAGFFSGESVHAGTSVGSSTDKQGEELGRWYMSRKEIEEYSPSRRDGIDLKKETYLRKSYCTFLQDLGMRLKVSDSNADRSSFSSSRLSRSSSSLSRLSRALSIRSSKISFPRRREFFGSETEFPGEANSEAKILTMPAKTCTICLGDLKIGQGRAIFVAECSHSFHFNCIASNVKHGSQVCPICRSKWKEIPSQAPAPTNVPAPHHDQNRGRARAPPSVPSPPTLLPSFSMREPTRFSDDEPLSVPAASAADHTSSAPSVVAVKCFTEYPVVSAFEAHPEFAVLASIRAPVLLQRDRAPIDLVTVLDMSGSMAGSKLSLLKHAVHFVIQNLGSSDRLSIVVFSSTAHRILPLRRMNESGRAEAALTISSLLTDGGTNILNGLKKGLRVLEERRERNPVSSIILLSDGKSQPSVTQPLTLPQLPGTTAIPVHSFGFGTDHDSTALHSISDSSGGTFSFIESIGMVGNAFARCIGGLLSVVAQELQLTVKTLTPGVQITSIRSGRYNSEICDEGRRSVIDIGNMYAEEEKGFLLYLSIPAAPTNEGGEMETKTPLLDITCQYKTSGASEEDLVKVEGERVEIQRSSEASPQMTVSLEVDRHRNRVLVAEGIAEAQRLAERGDLQGAKALLEAKRAILLASASATAGDAICTWLDAELRETKERMESRELYEHTGRAYVLSGLSSHSWQRSTTRGDSITQTFVCGDPAAVPPSGPIGYETPSMVSMVRMSQNLSITGPWPSPRA	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto2g2252	742	MobiDBLite	consensus disorder prediction	196	251	-	-
	Sto2g2252	742	Pfam	von Willebrand factor type A domain	302	459	IPR002035	-
	Sto2g2252	742	PANTHER	CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR	85	733	-	-
	Sto2g2252	742	ProSiteProfiles	VWFA domain profile.	302	480	IPR002035	-
	Sto2g2252	742	CDD	RING-H2	142	186	-	-
	Sto2g2252	742	SUPERFAMILY	Cyclin-like	27	74	IPR036915	-
	Sto2g2252	742	Pfam	RING-like zinc finger	142	171	IPR001841	-
	Sto2g2252	742	PANTHER	OS10G0464500 PROTEIN	85	733	-	-
	Sto2g2252	742	CDD	vWA_C3HC4_type	301	460	-	-
	Sto2g2252	742	Gene3D	von Willebrand factor, type A domain	302	474	IPR036465	-
	Sto2g2252	742	SMART	ring_2	142	185	IPR001841	-
	Sto2g2252	742	ProSiteProfiles	Zinc finger RING-type profile.	142	186	IPR001841	-
	Sto2g2252	742	SMART	VWA_4	300	471	IPR002035	-
	Sto2g2252	742	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	129	199	IPR013083	-
	Sto2g2252	742	Pfam	VWA / Hh protein intein-like	646	729	IPR032838	-
	Sto2g2252	742	Gene3D	-	18	80	-	-
	Sto2g2252	742	MobiDBLite	consensus disorder prediction	1	22	-	-
	Sto2g2252	742	SUPERFAMILY	vWA-like	298	472	IPR036465	-
	Sto2g2252	742	SUPERFAMILY	RING/U-box	141	198	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto2g2252	Sto-Chr2	36446580	36453025	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto2g2252	99	191	C3H Transcription Factor Family	AT1G74410	30.476	1.29e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto2g2252	-		-	sind:105175944	617.461