Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2247 ATGGTCCCCGGTATGCGCAAGCTCAAACACTCCTTCTCCACCCTCTTTTCCTCTTCCTCCGTCCCGAAATCTGACGATTCGGTGACTCACCCTTCTCCCCTCGCCGTCGCCGATCCCGGCGACGCCCCGCAACAGCAGCCGCAACCgacaccgccgccgccgccgccgcagcATCGCGGCTCCGACTCCAATGCCGACCGCtcttccttctcctcctccgcATCCTCCCGGCtgtctcgctcctcttcttcGTTGTCACGCCTCTCTCGCGCTCTCAGCATTCGATCCTCCAAGAAGACTTGCACTATTTGCTTGGGTGACTTGAAAATTGGGCAAGGGCGAGCTATCTTTGTGGCAGAGTGTTCCCActctttccatttcaattgcaTTGCTTCCAATGTCAAGCATGGAAGCCAAGTCTGTCCCATATGTCGCTCCAAATGGAAAGAAATTCCATCTCAAGCTCCAGCTCCAACCAATGTTCCTGCTCCTCACCACCACCAAAACAGGGGGAGGGCCAGAGCACCACCATCAGTACCTTCACCACCTACCCTCTTGCCATCCTTCTCGATGCGCGAGCCTACTCGCTTCTCTGATGATGAGCCTCTTTCTGTCCCAGCAGCTTCTGCAGCGGACCATACTTCATCTGCACCCAGTGTTGTGGCTGTCAAGTGCTTTACTGAATATCCTGTTGTCTCTGCATTTGAAGCTCATCCAGAATTTGCTGTTCTTGCTAGCATTCGTGCACCGGTACTTTTGCAACGTGATCATGCTCCTATTGACCTTGTTACAGTGCTTGACATCAGTGGTAGCATGGCTGGATCAAAGCTTTCACTCCTCAAGCATGCTGTTCATTTTATCATTCAGAACTTGGGGTCTTCGGACCGGCTTTCGATAGTTGTTTTCTCCTCAACAGCTCACAGAATTTTGCCACTTAGAAGGATGAATGAGAGTGGCCGAGCCGAAGCAGCCCTTACCATCAGTTCTCTTTTAACAGATGGTGGAACCAACATTCTTAATGGACTCAAAAAAGGACTTCGTGTGCTTGAAGAACGACAAGAGCGAAACCCAGTTTCTAGCATTATACTCCTCTCTGATGGCAAGTCTCAACCTTCGGTAACTCAGCCATTGACACTACCTCAATTGCCCAGAACCAATGCTATTCCTGTCCACTCTTTTGGCTTTGGTACTGATCATGATTCTACTGCATTGTATTCTATATCTGATTCATCTGGTGGCACCTTTTCCTTCATCGAATCCGTTGGCATGGTGGGAAATGCCTTTGCAAGGTGCATTGGTGGTCTTCTGAGTGTTGTGGCTCAGGAGCTACAACTCACTGTCAAAACACTAACACCAGGGGTGCAAATTACCTCAATTCGCTCGGGGCGATACAACAACGAAATCTGTGATGAGGGTAGGCGAAGTGTGATCGATATCGGTAACATGTATGCAGAAGAAGAGAAGGGATTTCTTTTGTACCTATCAATTCCAGCTGCCCCAACCAATGAAGGAGGAGAAATGGAGACCAAAACTCCATTACTTGACATCACATGCCAATACAAAACTTTAGGAGCATCTGAGGAGGACCTAGTCATGGTTGAGGGTGAAAGGGTTGAGATACAGATATCATCAGAGGCTTCACCACAAATGACGGTGTCGTTGGAGGTCGATAGACATCGGAATAGAGTCTTGGTGGCCGAAGGTATAGCAGAAGCTCAGAGGTTGGCTGAGAGGGGAGACTTGCAGGGAGCAAAAGCTTTGCTGGAAGCAAAAAGAGCAATACTATTAGCCTCAGCCTCTGCCACTGCAGGTGATGCTATCTGCACTTGGCTTGACGCTGAACTGAGAGAAACTAAGGAGAGGATGGAAAGCAGGGAACTATATGAACATACTGGAAGGGCTTATGTTCTCTCAGGATTGAGCTCACATTCATGGCAGAGGTCCACAACAAGAGGAGACTCTATAACTCAGACATTTGTCTGTGGTGATCCGGCGGCGGTGCCGGCGAGTGGGCCGATCGGGTATGAGACGCCTTCGATGGTGAGTATGGTAAGAATGTCACAGAATCTTAGCATAACTGGACCATGGCCTTCACCAAGAGcctga 2106 0.4729 MVPGMRKLKHSFSTLFSSSSVPKSDDSVTHPSPLAVADPGDAPQQQPQPTPPPPPPQHRGSDSNADRSSFSSSASSRLSRSSSSLSRLSRALSIRSSKKTCTICLGDLKIGQGRAIFVAECSHSFHFNCIASNVKHGSQVCPICRSKWKEIPSQAPAPTNVPAPHHHQNRGRARAPPSVPSPPTLLPSFSMREPTRFSDDEPLSVPAASAADHTSSAPSVVAVKCFTEYPVVSAFEAHPEFAVLASIRAPVLLQRDHAPIDLVTVLDISGSMAGSKLSLLKHAVHFIIQNLGSSDRLSIVVFSSTAHRILPLRRMNESGRAEAALTISSLLTDGGTNILNGLKKGLRVLEERQERNPVSSIILLSDGKSQPSVTQPLTLPQLPRTNAIPVHSFGFGTDHDSTALYSISDSSGGTFSFIESVGMVGNAFARCIGGLLSVVAQELQLTVKTLTPGVQITSIRSGRYNNEICDEGRRSVIDIGNMYAEEEKGFLLYLSIPAAPTNEGGEMETKTPLLDITCQYKTLGASEEDLVMVEGERVEIQISSEASPQMTVSLEVDRHRNRVLVAEGIAEAQRLAERGDLQGAKALLEAKRAILLASASATAGDAICTWLDAELRETKERMESRELYEHTGRAYVLSGLSSHSWQRSTTRGDSITQTFVCGDPAAVPASGPIGYETPSMVSMVRMSQNLSITGPWPSPRA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2247 701 CDD vWA_C3HC4_type 260 419 - -
Sto2g2247 701 ProSiteProfiles VWFA domain profile. 261 439 IPR002035 -
Sto2g2247 701 MobiDBLite consensus disorder prediction 1 89 - -
Sto2g2247 701 MobiDBLite consensus disorder prediction 155 210 - -
Sto2g2247 701 PANTHER OS10G0464500 PROTEIN 67 692 - -
Sto2g2247 701 SUPERFAMILY vWA-like 257 431 IPR036465 -
Sto2g2247 701 MobiDBLite consensus disorder prediction 11 27 - -
Sto2g2247 701 SMART VWA_4 259 429 IPR002035 -
Sto2g2247 701 SUPERFAMILY RING/U-box 97 157 - -
Sto2g2247 701 ProSiteProfiles Zinc finger RING-type profile. 101 145 IPR001841 -
Sto2g2247 701 MobiDBLite consensus disorder prediction 44 59 - -
Sto2g2247 701 Pfam RING-like zinc finger 101 130 IPR001841 -
Sto2g2247 701 Pfam von Willebrand factor type A domain 261 418 IPR002035 -
Sto2g2247 701 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 67 692 - -
Sto2g2247 701 CDD RING-H2 101 145 - -
Sto2g2247 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 150 IPR013083 -
Sto2g2247 701 Pfam VWA / Hh protein intein-like 605 688 IPR032838 -
Sto2g2247 701 SMART ring_2 101 144 IPR001841 -
Sto2g2247 701 MobiDBLite consensus disorder prediction 61 89 - -
Sto2g2247 701 Gene3D von Willebrand factor, type A domain 261 433 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2247 Sto-Chr2 36417051 36420756 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2247 94 150 C3H Transcription Factor Family AT1G74410 40.678 5.24e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2247 - - ming:122059919 615.15