Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2233 ATGATTCACAGCCTCTTAAGGAAAAGCTGGGAGGTTCAGCTTAAACACACCTACAGGGACAACAATATTCTTGCTGACAAGTTGGCCAAATTTGGTCAAACGCTTCAATTAGGCCTTCATAGTTTTGAGTTGATTCTTTCCTTTTGTAAAATTGTGTATGACAGTGATCTTAGGAAGCTTCAATCTCCCGATTTAGACATTGAATCCCTCCACGTTCCTCTAGCAGCTCCCACGAGTTGTTCTATTGGCGATCTCACTGAAGTTCACGTCGCATTGATCGAAATCTCTGTGGGGAGGGGTTGCGTCGAAATGTTGGGTGGGCTATACGGAGACCTCCCTCCGCCCTCTTCTGCTGAAGAGGAGAAACCTAGCAACGCCAATGTATGGTCGAGCAGCACCAAGATGGCGCCGGCTACTTTGCGCAAGCCAGCGTCGGTTTTCGCTCCTCCGCAGACGGTTCTGAGAACCTCAAACAAGCCTAAAGCTGCCAATTTGTCGGTACCTAAACCAGTGGTGTCAACGCCGGTTGCCGCACCGGCTCCGGTAGTGCCTGATGAGGTGGCACAACCGGCTCTTGTGGGTGTCCAATCGACGGTGATGGAGGAGTATGACCCTGCTAGGCCGAATGATTATGAGGAATTGAACATTTCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCTATGAGTGGGGCAATGCCAAGGTCTCCATCGCCACCTTCCAATGGTGATGGTTTTACTATTGGTAAGTCGGAAACAGGTGGGTTGGGCCTTGGTGCAGGTGGGCAAATGACTGCAGCTCAAAGAATGATGGCAAAGATGGGGTGGAAGGAGGGACAAGGGCTTGGGAAACAGGAGCAAGGAATTACCACTCCATTGATGGCCAAGAAAACAGATAGACGAGCTGGGGTTATTGTAAATGCTAGTGACAGTAAGCCCGAAAAGAAAGTGAAGAGTGTCAGTTTCAACGGGCCACCTACACGGGTACTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGGACGGTAACTCGGGTTCTGATATTTGAGATAACGGAGCCAAATTTCCCGGCCGATGAAGCAGTCAGAATCTTCGTGCAATTTGAGAGGTCTGAAGAAACAACAAAAGCCATTATTGACCTTGATGGTAGGTACTTCGGAGGTAGGGTGGTTCGAGCCGCATTTTATGATGAAGAGAGGTTCGGCAAGAATGAGTTGGCTCCAATGCCAGGAGAGATCCCTGGCTTTTTctga 1299 0.4965 MIHSLLRKSWEVQLKHTYRDNNILADKLAKFGQTLQLGLHSFELILSFCKIVYDSDLRKLQSPDLDIESLHVPLAAPTSCSIGDLTEVHVALIEISVGRGCVEMLGGLYGDLPPPSSAEEEKPSNANVWSSSTKMAPATLRKPASVFAPPQTVLRTSNKPKAANLSVPKPVVSTPVAAPAPVVPDEVAQPALVGVQSTVMEEYDPARPNDYEELNISGEEAWRRRAAMSGAMPRSPSPPSNGDGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKPEKKVKSVSFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRAAFYDEERFGKNELAPMPGEIPGFF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2233 432 SMART rrm2_1 328 409 IPR003954 GO:0003676
Sto2g2233 432 Gene3D - 326 412 IPR012677 -
Sto2g2233 432 PANTHER SPLICING FACTOR 45 SPF45 214 423 IPR040052 GO:0045292
Sto2g2233 432 PANTHER SPLICING FACTOR 45 SPF45 104 214 IPR040052 GO:0045292
Sto2g2233 432 CDD RRM_UHM_SPF45 325 421 IPR034653 -
Sto2g2233 432 ProSiteProfiles G-patch domain profile. 262 308 IPR000467 GO:0003676
Sto2g2233 432 Pfam G-patch domain 265 304 IPR000467 GO:0003676
Sto2g2233 432 SUPERFAMILY RNA-binding domain, RBD 330 415 IPR035979 GO:0003676
Sto2g2233 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 413 IPR000504 GO:0003723
Sto2g2233 432 SMART G-patch_5 260 306 IPR000467 GO:0003676
Sto2g2233 432 MobiDBLite consensus disorder prediction 226 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2233 Sto-Chr2 36290158 36294252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2233 268 303 C2H2 Transcription Factor Family AT5G26610 61.111 9.79e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2233 K12840 - zju:107418861 484.182