Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2222 ATGGGACCCACGCATTCCTTGGCCCAGATTCCCCCTCCCGATTCCCGGTCACCTCGTTCCCCCCTGCCCGAGAAATCGTACACCGAAATCCCTAATTCTCCTCGCGCCACGTCAATCTCCgaagaggagagagaaaatgTTTCCGTTGGAGGAAGCCTGGTTCGCGACGTCAGGATTCTCGATTTTCTCTCTCGAGCCGAAGAGGATTCCTCGCGCTGCCAAGGACAGGATTGTGTTTATGCCGTTGCCTTTGTGTTCTGCACATTGGATCTTCAGTTTGATAATGAAGCTAACGAGCAGCAACAAATGTCAGATTCAGAGATGCAGTCTTCATCTGCAAAAGGAATTTCTGGTTCTGGTACTGCTTCCCAGATGCTTCCATATGCAGCAGCTCCACAGCTTGGAGCTGGACATGCTATGGCACCACCTGTTTACCCTTACCCAGATCCTTACTATAGGAGCATCTTTGCTCCCTATGAGGCACAACCTTATCCACCACAACCCTATGGTACACAGCCAATGGTCCATCTTCAATTAATGGGAATTCAACAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGGCAGTCTCGTGCCAAAGCTCAATCAGTAAATAAAGTTGTCAAGAATCGCAAGCCATACTTGCATGAATCTCGACATTTGCATGCGTTGAGAAGAGCACGGGGATGTGGCGGTCGGTTTCTTAATTCAAAGAAAGACGAAAACCAACAGAATGAGGTGGCATCAACTGATAAATCACTGTCCAATATCAATCTCAATTCTGATAACAAGGATCTGGCTTAA 855 0.4655 MGPTHSLAQIPPPDSRSPRSPLPEKSYTEIPNSPRATSISEEERENVSVGGSLVRDVRILDFLSRAEEDSSRCQGQDCVYAVAFVFCTLDLQFDNEANEQQQMSDSEMQSSSAKGISGSGTASQMLPYAAAPQLGAGHAMAPPVYPYPDPYYRSIFAPYEAQPYPPQPYGTQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAQSVNKVVKNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQNEVASTDKSLSNINLNSDNKDLA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2222 284 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 94 270 - -
Sto2g2222 284 PRINTS CCAAT-binding transcription factor subunit B signature 197 219 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 PRINTS CCAAT-binding transcription factor subunit B signature 228 251 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 196 251 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 ProSiteProfiles NF-YA/HAP2 family profile. 194 254 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 94 270 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 MobiDBLite consensus disorder prediction 98 119 - -
Sto2g2222 284 MobiDBLite consensus disorder prediction 254 284 - -
Sto2g2222 284 SMART cbf3 193 254 IPR001289 GO:0003700|GO:0006355
Sto2g2222 284 MobiDBLite consensus disorder prediction 1 48 - -
Sto2g2222 284 Gene3D - 194 255 - -
Sto2g2222 284 MobiDBLite consensus disorder prediction 249 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2222 Sto-Chr2 36152262 36161307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2222 135 284 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.333 3.03e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto2g2222 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2222 K08064 - gmx:100809036 282.722