Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2213 ATGTGTCGTCAACTTCCCTTACTTAGAGCTTTGGATTTAAGTGGGAATCAATTTGAGGGAGGCATTCCAAAATCAATAATCAATTGTACATCTTTGAATTCATTACAGTTGGGTGGAAACTCATTTACAGGTTTTATACCCATGGAGATAGGCAATCTTGATAACCTTGAAACATTAGATTTGTCAGATAACTATTTGAAAGGATATATTCCTTCAAATATTTATGACATTTCAACATTGGAAAGGTTGTACCTTAGAGATAATTCTCTTTCTGGTCTTCTCTCCCAAAATATAGGAAGTGGTCAACTCCCAAAGAGCATGTTCAATACTTCAAAGCTTCTTTATTTAGGGTTGGATGGAAATAAATTTAGTGGAGTTATTCCCAATGCAATCGGAAATTTAACCAACTTGATCGAATTAAGTTTATCTCAAAATGACTTGAATGGGACCATTCCTATCACAATAAACAAATTACAGCGTCTTCAACGTTTGGATCTTAGTAACAACAGATTGCAAGGATCCATCATCAATGAAGTTTGCCAAATCAAAAGTCTGAGTGAGTTGAGTCTAGCCTCCAACATGTTTACGGGATTTGATCAAGAGTGCCTTGGGAATCTTACTTCTTTACAAAAGTTGACCTTGAGCTCTAACAAGTTGATTTCTTACATACCCTCATCTCTTTGGAGTCTCAAATATATCATGGAAGTAGATTTATCCTCCAATAAATTGAGTGGAACAATTCCACTTGAGATTTCAAACTTGAGAGCACTTACAATGTTGAACTTGTCAAGAAATCAAATTTCAGGAAACATTCCTTCAACTATTGGTGGCTTGCAAACTTTAGTAAAGCTATCTTTGGCGTACAACAAATTGCAAGGATCTATTCCTGAATCACTTGGAAATATGATAAGCATGGAGTTCTTGGATCTTTCCCAAAATAAGTTGTCGGGTGTGATTCCGAAGTCCTTAGAGTCACTTGTCCATCTAAAATACATGAACCTTTCTTATAATTTATTGCATGGAGAAATTCCAAATGGAGggccttttaaaaattttacagcTGAATCGTTTATGATGAATGGAGATCTTTGTGGGAAGCCCCAGCTTCAGGTCCATCCATGTCAAAATGGAAACAGGCAAAGGTCAACTAAAAAGAAGTTTTTGATCAAATGCTTAGTGCCTATCATGTTGGGTGTCATTTTGGTTGTTTCATGCATAATCTTTCTAAAACGTAAGAAAGATATTAGTGATTCAACCAACAGGGATTTATTGAATATGGAGAAACCAATCAGAATATCTTACTATGAACTTCTACAAGGAACAAATGGACTCGATGAGAGTAATTTACTTGGCAAGGGTAGTTTTGGATCAGTATACAAAGGAATACTTACAAGTGGACAAATTGTTGCAGTTAAAGTATTTAACTTAGATTTGGAAGAAGCTTTAAGAAGTTTTGATACTGAATGCACTGCTATTTGCAATTTGCGTCATCGCAATCTTATTAAAATCATCAGTAGTTGTTCAAATGTTGATTTTAAATCTCTGATAATGGAATTTATGCCAAATGGAAGTCTTGACAAATGGTTATATTCTCATAACTATTGTTTAGATTTCTTACAAAGGTTGAACATAATGATTGATGTGGCATCTGCATTGGACTATCTTCACCATGGTTCATCTACACCAACAATTCATTGTGATGTGAAACCAAGCAATGTTTTATTGGACAACGATATGGTGGCCCATCTTAGTGACTTTGGTATTGCCAAACTATTAGGTGAACAACAATTGCAAATTCATACAGAGACTTTTGCTACAGTTGGCTATATGGCACCAGAGTATGGATCGAAAGGAGTTGTTTCCGTTAAAGGAGATGTATACAGTTATGGTATCATGCTGATGGAAATGTTTACAAGAAAGAAGCCAACAGATAACATGTTTGTTAATGGTCTATGTTTGAAAGAATGGGTTAGCAAAGCGACGCCACATTCAATCATCAATATTTTGGATGCTAATTTACTACAAGGTGACAATCAAAATATTGATGTCGTGGTGTCAATGGCAAAGATTAAGGTCATGTTTATGCAAAATGATGAAAGATCTTCATATATAGTCTTGATACCTGGCCTCTCAGAAACAGATCTAATACATCTCAGAGCTATTCCAAGCACATCCTTCATTCCCTTTTCTGCAACTGAATTCCCCATTTCTAGCATCAATGCAGCATCAAAGCATTCCGAGCCTCGGCCTTCCGCGACTCGCAACCTTACCCAATCGGTCATATCTACACCTCCTTCCTCGCCCGATATCACATCGCCGGCACACCTTCCGGTTAGAAGTTCCAAAAGTATCACTCCAAAAGCATAA 2367 0.3612 MCRQLPLLRALDLSGNQFEGGIPKSIINCTSLNSLQLGGNSFTGFIPMEIGNLDNLETLDLSDNYLKGYIPSNIYDISTLERLYLRDNSLSGLLSQNIGSGQLPKSMFNTSKLLYLGLDGNKFSGVIPNAIGNLTNLIELSLSQNDLNGTIPITINKLQRLQRLDLSNNRLQGSIINEVCQIKSLSELSLASNMFTGFDQECLGNLTSLQKLTLSSNKLISYIPSSLWSLKYIMEVDLSSNKLSGTIPLEISNLRALTMLNLSRNQISGNIPSTIGGLQTLVKLSLAYNKLQGSIPESLGNMISMEFLDLSQNKLSGVIPKSLESLVHLKYMNLSYNLLHGEIPNGGPFKNFTAESFMMNGDLCGKPQLQVHPCQNGNRQRSTKKKFLIKCLVPIMLGVILVVSCIIFLKRKKDISDSTNRDLLNMEKPIRISYYELLQGTNGLDESNLLGKGSFGSVYKGILTSGQIVAVKVFNLDLEEALRSFDTECTAICNLRHRNLIKIISSCSNVDFKSLIMEFMPNGSLDKWLYSHNYCLDFLQRLNIMIDVASALDYLHHGSSTPTIHCDVKPSNVLLDNDMVAHLSDFGIAKLLGEQQLQIHTETFATVGYMAPEYGSKGVVSVKGDVYSYGIMLMEMFTRKKPTDNMFVNGLCLKEWVSKATPHSIINILDANLLQGDNQNIDVVVSMAKIKVMFMQNDERSSYIVLIPGLSETDLIHLRAIPSTSFIPFSATEFPISSINAASKHSEPRPSATRNLTQSVISTPPSSPDITSPAHLPVRSSKSITPKA 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2213 788 SMART LRR_typ_2 182 205 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 326 350 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 134 158 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 302 325 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 254 278 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 53 77 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 206 230 IPR003591 -
Sto2g2213 788 SMART LRR_typ_2 5 29 IPR003591 -
Sto2g2213 788 SUPERFAMILY RNI-like 11 344 - -
Sto2g2213 788 ProSiteProfiles Protein kinase domain profile. 444 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2213 788 PRINTS Leucine-rich repeat signature 161 174 - -
Sto2g2213 788 PRINTS Leucine-rich repeat signature 206 219 - -
Sto2g2213 788 SMART LRR_sd22_2 158 190 - -
Sto2g2213 788 SMART LRR_sd22_2 206 225 - -
Sto2g2213 788 SMART LRR_sd22_2 254 280 - -
Sto2g2213 788 SMART LRR_sd22_2 302 328 - -
Sto2g2213 788 SMART LRR_sd22_2 53 79 - -
Sto2g2213 788 Gene3D Transferase(Phosphotransferase) domain 1 520 703 - -
Sto2g2213 788 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
Sto2g2213 788 Pfam Protein kinase domain 446 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2213 788 Pfam Leucine Rich Repeat 8 29 IPR001611 GO:0005515
Sto2g2213 788 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 130 684 - -
Sto2g2213 788 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 130 - -
Sto2g2213 788 SMART serkin_6 444 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2213 788 Gene3D Phosphorylase Kinase; domain 1 407 519 - -
Sto2g2213 788 SUPERFAMILY Protein kinase-like (PK-like) 425 663 IPR011009 -
Sto2g2213 788 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 130 684 - -
Sto2g2213 788 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 7 130 - -
Sto2g2213 788 Pfam Leucine rich repeat 184 243 IPR001611 GO:0005515
Sto2g2213 788 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Sto2g2213 788 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Sto2g2213 788 Pfam Leucine rich repeat 31 90 IPR001611 GO:0005515
Sto2g2213 788 MobiDBLite consensus disorder prediction 742 788 - -
Sto2g2213 788 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Sto2g2213 788 Gene3D Ribonuclease Inhibitor 97 376 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2213 Sto-Chr2 36052674 36061695 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2213 4 675 Receptor kinase-like Gene Family AT3G47570 38.667 1.96e-149 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2213 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2213 - K13420 mtr:MTR_6g040210 706.057