Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2208 ATGTTCTTACTCCAATTATGTGTCATGGCTTCCTTGACTTGGAGTAAAACAAGCAATATTATCACCGATCAATCTTCACTTCTTGCTTTCAAATCTTCTCTCACCTCTATTGATAATCCAAACAATCCCTTATCTAATTGGTctatttcttcttctccatgCAATTGGATAGGTGTGACTTGTAATATCCGCCATGGAAGAGTTCGTTCCTTGAATCTTGGCGATATGGGTCTCGAAGGAAACATATCTCCTCAATTGGGGAATCTCTCATTTCTCGTGAAGCTCCATCTCGGTGGAAACAATTTCCACGGCGAACTGCCGAAAGAGCTGGCTCAATTGCGAAGATTGAAACTGCTCAACTTGAGTTTCAACGAGTTTGATGGAGAAGTTCCTGCATGGATAGGAGAATTTTCTGAAGTTCAGTACTTGAATTTTCGTAGTAATAATCTTAGTGGGGTTATTCCATCTTCTATATCTAACCTATCAAGGTTGGAAACTTTGGATTGGAGTCGTAATCTCATTGGAGGGAATATTCCACATGAGATTGGAAGACTCAAAAACTTGAAGATGTTGATAATTCAATATAATAAGCTCTCAGGGACCATACCCAATACCATTTCCAATTTATCTTCAATTGAAGCATTGAGCTTGGTTTTTAACACTCTATCAGGAGGGATCCCAAAAGAGATGGGTGATCTTCCAATGCTAAGAATAATGTACCTTGGAAATAATCGACTTTCTGGCTTTGTACCATCAACAATATTCAACAGCACAGTGTTAGAAGAAATTGATCTTGCTGACAATAATTTGTCTGGCACTATTCCATCGAATATATGTCATGGACTTCCAAAACTTGTAgtgttttatataaataataataacttttctGGCCAAATACCATCTATTTGGCATCAATGCAAAGAGTTGAGGCTATTGCAACTATCTGGATTCGAAGGTGGATATATATCAAGTGACATTGGAAATATGACCAACCTCCAATACTTATATCTTGTTGGCAACAACTTAGAagGTGAAATTCCATCTTCTCTTCTCTACAATATGCCTTCTTTGCAAATAGTCAACATTGGTCATAACCGTTTACATGGTAATCTACCACAAGAGATGTGCCACAACCTTCCTTTACTGGAAGATTTCGGCTCAACTGGCAATCAATTGGAAGGAAGCATTCCAAGATCAATAAGTAACTGTACATCTTTAAAAAGATTGCAGTTGGGTATAAACTCACTTACAGGTTTTCTACCAAAGGAGATAGGTAATCTTGAGATGCTTGAGGTATTATCTTTGGCTGGAAATCTTCTGAGTGGACCTATTCCTTCCAATATTTTCAACATTTCAACATTGACAAGAATGTTTCTTGGATCCAATTCCTTTTCTGGCCTTCTCCCACCAAATATAGGAAGTGGCTTTACCAATCTAGAAAGATTGACACTAACAGAAAATCAACTTACCGGAACACTTCCAAAGAGTATGTTCAATGCTTCTAAACTAAATTACTTGGAGTTAGatttgaatgaatttggtgGAGAAATTTCGAGTGCAATTGGAAATTTAACCAACTTGATCCAATTAAGTTTAGATGGAAATGATTTGAATGGACTAATTCCTTCTACAATTAACAAATTAGAAGGCCTTCAACGCTTCGGTCTTAGTAACAACCGATTCCATGGCTCCATTGTTGATGAAATTTGCCAAATAAGAGGTTTGAGTGAGTTGTATCTAGCCCACAACATGTTTTCAGGATTAGTTCCAGGGTGCCTTGGGAATCGTACTTCTTTGCGAAGGTTGGATTTGAGTTTTAACAAGTTGATTTCTCATGTACCTTCTTCTCTTTGGAGTTTGAAAGATATCATAGAGGTAGACTTATCCTCTAACGTATTGAGTGGAAGAATTCCAATTGAGATTTCAAACTTGAGAGCACTTGCATTGTTGAACTTGTCAAGAAATCAATTTTCAGGAAACATTCCTACAACCATTAGTGGCTTGCTAACTTTGGTAAACCTATCATTGGCGCATAACAAATTGCAGGGACCTATTCCTGAGTCACTTGGTAGCTTGATAAGCTTGGAGTTCTTGGATCTTTCTCAAAATTATTTATCTGGTGTGATTCCAAAGTCATTAGAATCACTTGTCAATCTTAAATACATTAACCTTTCTTACAACTTATTACATGGAGAAATTCCAAATGGTGgtccttttaaaaattttacagcTGAATCTTTTCTGATGAATGAAGATCTTTGTGGGAAGCCCCAACTACAAGTCCATCCATGTAAAGAAGGAAAGAGGAAAAGGCTCACCAAAGATATGCTTTTGCTCAAATGCTTGTTGCCTCTGATGTTGGCAGTCATTTTGGTTGTTTCATGCATAGTCTTTCTGAaacgtaagagagattatgttGGTGATTCAACCAATAGGGATTTATTAAATTTGGACTCGCTAATTAGGATATCCTACTATGAACTTCTAGAAGGTACAAATGGATTTGATGAGAGTAATTTACTTGGCAAGGGCAGTGTTGGATCAGTATACAAAGGAATTCTTTCAAGTGGAAAGATAGTTGCAGTGAAAATATTTAACTTAGATTTGGAAGAAGCATTAAGAAGTTTTGATACTGAATGCACTGCCATATGCAATTTGCGTCATCGCAATCTCATTAAGATCATTGGTTGTTGTTCAAATGTTGATTTTAAATCTCTAATAATGGAATTTATGCCAAATGGAAGTCTTGAGAGATGGTTGTATTCTTATAACTATTGCTTGGATGTCTTACAAAGGTTGACCATAATGATTGAAGTGGCATCAGCAGTAGAATATCTTCATCATGGTTCCCCTACTCCAGTGGTTCATTGCGATGTAAAACCAAGTAATGTTTTATTAGATGAAAATATGGTAGCCCATCTTAGTGATTTTGGTATTGCCAAATTGTTAGAGTACGGATCAAAAGGAGTTGTTTCTAGAAATGGAGATGTATATAGTTATGGTATTATGCTGATGGAAATGTTTACAAGGAAGAGGCCAACAGATGACATGTTCGTTCAAGGTCTAAGTTTGAAAGACTGGGTTAGAAAATCGACACCAAATTCAATCATGAATATTTTGGATGCCAATTTGTTGCAAGGAGACAATCAAAATATTGGTGATATATTATCTCCTATGTCATCGATTTTTGAATTAGCCTTGAATTGTTGTAGTGATTTACCTGAGTCACGAATTAATATGACTGATGTTGTGGTGATATTAAACAAAATCAAGGTTAAGGTTATGCAAGATGGTAAAGTAGGGCACCACAAGTTGAATAACTATTAG 3327 0.3547 MFLLQLCVMASLTWSKTSNIITDQSSLLAFKSSLTSIDNPNNPLSNWSISSSPCNWIGVTCNIRHGRVRSLNLGDMGLEGNISPQLGNLSFLVKLHLGGNNFHGELPKELAQLRRLKLLNLSFNEFDGEVPAWIGEFSEVQYLNFRSNNLSGVIPSSISNLSRLETLDWSRNLIGGNIPHEIGRLKNLKMLIIQYNKLSGTIPNTISNLSSIEALSLVFNTLSGGIPKEMGDLPMLRIMYLGNNRLSGFVPSTIFNSTVLEEIDLADNNLSGTIPSNICHGLPKLVVFYINNNNFSGQIPSIWHQCKELRLLQLSGFEGGYISSDIGNMTNLQYLYLVGNNLEGEIPSSLLYNMPSLQIVNIGHNRLHGNLPQEMCHNLPLLEDFGSTGNQLEGSIPRSISNCTSLKRLQLGINSLTGFLPKEIGNLEMLEVLSLAGNLLSGPIPSNIFNISTLTRMFLGSNSFSGLLPPNIGSGFTNLERLTLTENQLTGTLPKSMFNASKLNYLELDLNEFGGEISSAIGNLTNLIQLSLDGNDLNGLIPSTINKLEGLQRFGLSNNRFHGSIVDEICQIRGLSELYLAHNMFSGLVPGCLGNRTSLRRLDLSFNKLISHVPSSLWSLKDIIEVDLSSNVLSGRIPIEISNLRALALLNLSRNQFSGNIPTTISGLLTLVNLSLAHNKLQGPIPESLGSLISLEFLDLSQNYLSGVIPKSLESLVNLKYINLSYNLLHGEIPNGGPFKNFTAESFLMNEDLCGKPQLQVHPCKEGKRKRLTKDMLLLKCLLPLMLAVILVVSCIVFLKRKRDYVGDSTNRDLLNLDSLIRISYYELLEGTNGFDESNLLGKGSVGSVYKGILSSGKIVAVKIFNLDLEEALRSFDTECTAICNLRHRNLIKIIGCCSNVDFKSLIMEFMPNGSLERWLYSYNYCLDVLQRLTIMIEVASAVEYLHHGSPTPVVHCDVKPSNVLLDENMVAHLSDFGIAKLLEYGSKGVVSRNGDVYSYGIMLMEMFTRKRPTDDMFVQGLSLKDWVRKSTPNSIMNILDANLLQGDNQNIGDILSPMSSIFELALNCCSDLPESRINMTDVVVILNKIKVKVMQDGKVGHHKLNNY 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2208 1108 Gene3D Transferase(Phosphotransferase) domain 1 911 1103 - -
Sto2g2208 1108 Gene3D Phosphorylase Kinase; domain 1 800 910 - -
Sto2g2208 1108 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Sto2g2208 1108 SUPERFAMILY L domain-like 41 382 - -
Sto2g2208 1108 ProSiteProfiles Protein kinase domain profile. 835 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2208 1108 Gene3D Ribonuclease Inhibitor 280 376 IPR032675 -
Sto2g2208 1108 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 389 519 - -
Sto2g2208 1108 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 139 - -
Sto2g2208 1108 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 282 418 - -
Sto2g2208 1108 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 137 279 - -
Sto2g2208 1108 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 518 1095 - -
Sto2g2208 1108 SMART LRR_typ_2 185 209 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 597 620 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 524 547 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 427 451 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 329 353 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 89 113 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 258 281 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 716 740 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 644 668 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 572 595 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 476 500 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 354 378 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 692 715 IPR003591 -
Sto2g2208 1108 SMART LRR_typ_2 233 257 IPR003591 -
Sto2g2208 1108 SMART serkin_6 835 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2208 1108 SUPERFAMILY RNI-like 389 735 - -
Sto2g2208 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 282 418 - -
Sto2g2208 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 137 279 - -
Sto2g2208 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 518 1095 - -
Sto2g2208 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 11 139 - -
Sto2g2208 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 389 519 - -
Sto2g2208 1108 Gene3D Ribonuclease Inhibitor 474 772 IPR032675 -
Sto2g2208 1108 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Sto2g2208 1108 Gene3D Ribonuclease Inhibitor 377 473 IPR032675 -
Sto2g2208 1108 Gene3D Ribonuclease Inhibitor 21 176 IPR032675 -
Sto2g2208 1108 Pfam Protein kinase domain 836 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2208 1108 SMART LRR_sd22_2 596 612 - -
Sto2g2208 1108 SMART LRR_sd22_2 668 691 - -
Sto2g2208 1108 SMART LRR_sd22_2 329 344 - -
Sto2g2208 1108 SMART LRR_sd22_2 185 211 - -
Sto2g2208 1108 SMART LRR_sd22_2 257 280 - -
Sto2g2208 1108 SMART LRR_sd22_2 692 718 - -
Sto2g2208 1108 SMART LRR_sd22_2 427 453 - -
Sto2g2208 1108 SMART LRR_sd22_2 137 163 - -
Sto2g2208 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Sto2g2208 1108 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Sto2g2208 1108 Pfam Leucine rich repeat 671 729 IPR001611 GO:0005515
Sto2g2208 1108 SUPERFAMILY Protein kinase-like (PK-like) 816 1087 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2208 Sto-Chr2 35993102 36005301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2208 26 1094 Receptor kinase-like Gene Family AT5G46330 34.153 1.35e-180 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2208 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2208 - K13420 mtr:MTR_8g465340 956.822