Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2178 ATGGAGAACAACAGAAACAAACTTACAtgggaaaaagaaatattaagggGAAGAGCAaaagGATTAGGTAACAGGCCTTCTTATACTTGGCGTAGCTTGATGGTTGGAAGAGAACTTCTTTCAGAGGGATTATACAGATGTATAGGTGATGGGAGATCTACGATGGTGTGGAAGGATCCTTGGATACCAGGGATAAAAGTGGGGGAACTTACCACGATAAGTGATGAAGCTGTGAACTATACACGAATTTGTGATCTGATCAGTGTTGACAATCGAGGTTGGGATAGGCAAGTGCTGAATACAATCTTTGATAGGGACACAGTTGAAAAGATATTATGTATTCCAATTAATCGACTACATCTACCTGACAGATGGGCTTGGAAAGGAGAATCAAACGGAAATTTCACAGTGAAATCTTGCTACAAGTTAGCAATGAGGGATAATTGGGAGAATATCAATCTGACTCCGGATCTGTTCTGCGACGTACCAACGGCTTTCTGGAAAAGCATGTGGAAGCTCCCGGTGCTGTCTAGATTCAAAGTCAATTTCTGGAGAGCATGCTTAGGCATTATTCCTACTTTGGATGCACTTGAGAAGAGAGGTGTGCTAATAAATGAGGCGTGTGTATTCTGTGAACGAGAGTCAGAGAGTGTGTTCCATATTTTTGCTGAGTGTCAAGCAGTGAAACAAGTATGGGAAGAGGCAAGATTCGGTTTTTCAAGCTGGAGATACCACCAATCGTTGCTTGAATGGATGTCAATCGAATGGGGAGGATGGGAAAACGAGAAAAGATGTGTCTTCGTTATCGCCTTGTCCTTCATCTGGGAAATGAGAAACTGTAAGAAGTTTGCCAATGATCCCATTAATCTAACGGGTTTATGGGCTAAAGTGGAAAGACAATGGGATGAGTTATGTGTGGCTAAAGAGGGCGAGGTGTTTGAAGTTCCCTCAAGCTTGAAGTGGGAGAAGCCAGATGGagcagccatgaaattaaacatAGACGCATCAGTGAAGATTTCTGGTGAAGGGGCGCTGGGAGGAGTGATACGAGACAGTGAAGGCACCACTCATGGAGTCTTTATGGCCTCAACCCCAGTTTTGAAGGATGTGACTCTTTTAGAAGCTTTGGCAGTTCAAAAGGGAGTGGAGATGGCACTTAGATTGGGAGTGAAAGAATTAGTGGTGGAAAGTAACTCAAAGCTTGTTATTGATATGCTAAATTCCAATTGTGTTCACGGGTCCTTGCTAAGCTCTGTCTGCAACACTATATCTGATGTTTGTGTAGGCTTTAGCTATGTGAGGTTTAGGTGGGTACCGAGAGCATGCAATCAGTGTGCAGATTTTATTTGTAAGTTAGCTAGACAAGTGGCAGCTTGGAGTAAAACAAACATTACCACTGATGAATCTGCTCTTCTTGCTTTCAAATCTTCTATCACCTCTGATCCGTATGATTTTTTGGCTAATTGGTCAGTCTCTTCATCTCCATGTGATTGGGTTGGTATCACTTGCAATGCTCGTCATGGAAGGGTTCATTCCTTGAATCTGGGTGACATGGGTCTCAATGGCACCATATCTCCTCATTTGGGAAATCTCTCATTTCTTGTTGAACTTGATCTTAGTTTCAACAACTTTCATGGTCATTTGCCGAAAGAGTTGGTTCAATTGCGGAGATTGAAACTACTCAACTTGAGTTTCAATGAATTTGATGGAGAAGTTCCTACGTGGATAGGGGGTTTACATGCACTCCAACACTTGAGTCTTCGTAATAATAGTTTGAATGGAATCATTCCATTATCTGTATCCAACCTCTCAAGCTTAGAGACTTTAGATTGGAATGATAATTTCATTGAGGGGAAAATTCCACATGAGATTGGAAGACTCAAGAGCTTGAAGATTCTAAGAATGGCTAATAACAAATTTTCGGGAATCATACCACAGGCAATTTTCAATTTATCTTCACTTGAACGGTTGAGTTTGTCTTACAACAATTTATCAGGAAACATTCCAAAAGAGATTGGTGATCTTCCACAGTTAAAAATCATATATCTTGGGAATAATCAATTTTCTGGTTCTATACCATTAACAATATTTAATAGCTCATTGCTACAAGAAATTGATCTTATCCACAATAACTTAACTGGTAGTCTCCCATCAAATATATGTCATGGGCTTCCAAAACTTGAACTACTCTATTTGAATGACAATAATTTTTCTGGAGAGCTACCATCTGATTGGCATCAATGCAAAGAATTGAGAAGATTACAATTAAATGGATTTGATGGTGGATACATACCAAGTGACATTGGAAATTTGACCAACCTCCAATATTTATATCTTGGTGAAAACAACTTGAAagAAACTAACCCCAGGGCGTCCCCTGGTGTGGGCACATGTCAGTACCATACTGTGGATCCTCTTGCACCCGGTTTTATACCTAAGGGCATAGGCAATCTTAACAAACTTGAGAAATTAGATTTGGGAAGCAACCATTTGAGTGGAGATATTCCTTTCAacattttcaatatttcaacattGACTATATTGAGTCTTTCATCTAATAATCTCTCAGGCATTCTTCCTCCAAATATAGGAAGTGGCCATACCAATCTAAGGAAGTTGCATCTATCAGAAAATCAACTTACAGGAAAAATCCCAATGAGCATATCAAATGCTTCTAAGCTTGTTCTTTTGGACTTGGGATCAATTCCAGAGTGCCTTGGCAATCTGACTTCTTTGCGAAAGTTGTATTTGACTTCTAATAAATTGATTTCTCACATGCCCTCTTCTCTTTGGAGACTCAAAGATATCATGGAGATAGACTTATCCTCCAATGCATTGAGCGGAAGAATTCCACTTGAAATTTCAAGCTTGAGAGCACTTATATTGTTGAATTTGTCAAGAAATCAAATTTCAGGAAAGATTCCTCCAACTATTGGTAGCTTACAAATGTTGCACAATCTATCTTTGGCACATAACAAATTGGAAGGGCCTATTCCTGAATCACTTGAAAATATGATAAGCTTGGAGTTCTTGGATCTTTCCCAAAATTTTTTGTCTGCATCTGCATTGGAGTATCTTCATCACGATTCTTCTACACCAACAATTCATTGTGATGTGAAACCGAGCAATGTTTTGTTGGATGAAGATATGGTGGCTCATCTTAGTGATTTTGGTATGGCAAACCTATTGGGTGAGAGGCAATTACAAATTTATACCGAGACTTTTGCTACAATCGGTTATATGGCACCAGatgccaaattagtaattcaaaaagTTGAGTTCATGGTATTGAAGGAGCTGGAGTTAAGTTGGAGTCAACCAGAGCTAATTTGGAacctttggattgaagaaaagctcactctttaa 3366 0.3832 MENNRNKLTWEKEILRGRAKGLGNRPSYTWRSLMVGRELLSEGLYRCIGDGRSTMVWKDPWIPGIKVGELTTISDEAVNYTRICDLISVDNRGWDRQVLNTIFDRDTVEKILCIPINRLHLPDRWAWKGESNGNFTVKSCYKLAMRDNWENINLTPDLFCDVPTAFWKSMWKLPVLSRFKVNFWRACLGIIPTLDALEKRGVLINEACVFCERESESVFHIFAECQAVKQVWEEARFGFSSWRYHQSLLEWMSIEWGGWENEKRCVFVIALSFIWEMRNCKKFANDPINLTGLWAKVERQWDELCVAKEGEVFEVPSSLKWEKPDGAAMKLNIDASVKISGEGALGGVIRDSEGTTHGVFMASTPVLKDVTLLEALAVQKGVEMALRLGVKELVVESNSKLVIDMLNSNCVHGSLLSSVCNTISDVCVGFSYVRFRWVPRACNQCADFICKLARQVAAWSKTNITTDESALLAFKSSITSDPYDFLANWSVSSSPCDWVGITCNARHGRVHSLNLGDMGLNGTISPHLGNLSFLVELDLSFNNFHGHLPKELVQLRRLKLLNLSFNEFDGEVPTWIGGLHALQHLSLRNNSLNGIIPLSVSNLSSLETLDWNDNFIEGKIPHEIGRLKSLKILRMANNKFSGIIPQAIFNLSSLERLSLSYNNLSGNIPKEIGDLPQLKIIYLGNNQFSGSIPLTIFNSSLLQEIDLIHNNLTGSLPSNICHGLPKLELLYLNDNNFSGELPSDWHQCKELRRLQLNGFDGGYIPSDIGNLTNLQYLYLGENNLKETNPRASPGVGTCQYHTVDPLAPGFIPKGIGNLNKLEKLDLGSNHLSGDIPFNIFNISTLTILSLSSNNLSGILPPNIGSGHTNLRKLHLSENQLTGKIPMSISNASKLVLLDLGSIPECLGNLTSLRKLYLTSNKLISHMPSSLWRLKDIMEIDLSSNALSGRIPLEISSLRALILLNLSRNQISGKIPPTIGSLQMLHNLSLAHNKLEGPIPESLENMISLEFLDLSQNFLSASALEYLHHDSSTPTIHCDVKPSNVLLDEDMVAHLSDFGMANLLGERQLQIYTETFATIGYMAPDAKLVIQKVEFMVLKELELSWSQPELIWNLWIEEKLTL 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2178 1121 Pfam Leucine rich repeat 629 688 IPR001611 GO:0005515
Sto2g2178 1121 ProSiteProfiles Protein kinase domain profile. 857 1121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2178 1121 SMART LRR_sd22_2 771 787 - -
Sto2g2178 1121 SMART LRR_sd22_2 909 925 - -
Sto2g2178 1121 SMART LRR_sd22_2 818 844 - -
Sto2g2178 1121 SMART LRR_sd22_2 867 893 - -
Sto2g2178 1121 SMART LRR_sd22_2 579 600 - -
Sto2g2178 1121 SMART LRR_sd22_2 651 677 - -
Sto2g2178 1121 SMART LRR_sd22_2 981 1004 - -
Sto2g2178 1121 SMART LRR_sd22_2 1005 1028 - -
Sto2g2178 1121 Gene3D Ribonuclease Inhibitor 807 1022 IPR032675 -
Sto2g2178 1121 SUPERFAMILY RNI-like 810 1029 - -
Sto2g2178 1121 CDD RNase_H_like 331 451 IPR044730 -
Sto2g2178 1121 Pfam Protein kinase domain 1021 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2178 1121 Gene3D - 327 459 IPR036397 GO:0003676
Sto2g2178 1121 Gene3D Ribonuclease Inhibitor 462 615 IPR032675 -
Sto2g2178 1121 Pfam Reverse transcriptase-like 333 452 IPR002156 GO:0003676|GO:0004523
Sto2g2178 1121 SUPERFAMILY L domain-like 466 722 - -
Sto2g2178 1121 Gene3D Ribonuclease Inhibitor 721 800 IPR032675 -
Sto2g2178 1121 Pfam Leucine Rich Repeat 582 603 IPR001611 GO:0005515
Sto2g2178 1121 SMART LRR_typ_2 1005 1028 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 579 602 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 845 866 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 909 933 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 675 699 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 771 794 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 724 748 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 700 723 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 957 981 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 627 650 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 818 842 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 531 555 IPR003591 -
Sto2g2178 1121 SMART LRR_typ_2 651 674 IPR003591 -
Sto2g2178 1121 Pfam Leucine rich repeat N-terminal domain 466 504 IPR013210 -
Sto2g2178 1121 Pfam zinc-binding in reverse transcriptase 135 232 IPR026960 -
Sto2g2178 1121 SUPERFAMILY Protein kinase-like (PK-like) 1020 1086 IPR011009 -
Sto2g2178 1121 SUPERFAMILY Ribonuclease H-like 329 455 IPR012337 -
Sto2g2178 1121 SUPERFAMILY L domain-like 692 790 - -
Sto2g2178 1121 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 458 545 - -
Sto2g2178 1121 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1020 1085 - -
Sto2g2178 1121 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 762 1020 - -
Sto2g2178 1121 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 644 899 - -
Sto2g2178 1121 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 514 789 - -
Sto2g2178 1121 Gene3D Ribonuclease Inhibitor 616 720 IPR032675 -
Sto2g2178 1121 Gene3D Transferase(Phosphotransferase) domain 1 1023 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2178 Sto-Chr2 35565571 35612191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2178 505 886 Receptor kinase-like Gene Family AT3G47570 31.401 6.89e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2178 RVT_3 3.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2178 - K13420 gmx:100784397 469.159