Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2031 TTGGTGTTTCGGAGTCGATTACCGCGTAAAATCCGGGAGAAAGCCATGCAGAGCCAGCTTGTGTGTAGTGGATGCAGGAGCATTTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGCGCATTGTGCAGCACAATTACCTCTGTTCCTCCACCTGGAATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGAACGTTGCTAATGTATACTCGCGGAGCTACAAGTGTGAGATGTTCCTGTTGTCAAACTGTAAACCTTGCCTCAGCATCTAACCAAGTCGCTCATATCCACTGTGGGAATTGCCGGACAACACTAATGTACCCATTTGGTGCTCCATCTGTCAAATGTGCAGTTTGTCAGTATATTACTAATGTCAGTAATTGTTGTAGTGCTAGGCGCGTGAAGGTCATGTGCAGGGAGACTCTTCGGTTTGTCAATGGACTTCGTTTTGAGATTCAAAATGAACTTAAATTGAATTTTCTTGATTCCATAGAAACAACTTACCATAGGGCCCTTGAAGTAGAGTCTCTGTCTAGGTACACATCTGTTAGGTGTTTCATTGCCATTGGACCAGAATTTAGACCAACTCACAATTCTGCGTCAGCTAGCCGTTCTGTGGGAGTATCACAACCTAAGGAAACTTCTGTGTACCCTTCCAATCATTGGATTGAATCTAAAAGTCAAGCTCTCGCTCTAGTGGTCCCACCATAG 714 0.444 LVFRSRLPRKIREKAMQSQLVCSGCRSILLYPRGATNVCCALCSTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCQTVNLASASNQVAHIHCGNCRTTLMYPFGAPSVKCAVCQYITNVSNCCSARRVKVMCRETLRFVNGLRFEIQNELKLNFLDSIETTYHRALEVESLSRYTSVRCFIAIGPEFRPTHNSASASRSVGVSQPKETSVYPSNHWIESKSQALALVVPP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2031 237 PANTHER LSD1-LIKE PROTEIN 16 133 - -
Sto2g2031 237 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 19 49 IPR005735 -
Sto2g2031 237 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 96 125 IPR005735 -
Sto2g2031 237 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 58 87 IPR005735 -
Sto2g2031 237 Pfam LSD1 zinc finger 61 85 IPR005735 -
Sto2g2031 237 Pfam LSD1 zinc finger 99 123 IPR005735 -
Sto2g2031 237 Pfam LSD1 zinc finger 22 46 IPR005735 -
Sto2g2031 237 PANTHER PROTEIN LSD1 16 133 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2031 Sto-Chr2 34103940 34112153 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Sto2g2031 zf-LSD1 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2031 - - mtr:MTR_8g089310 221.476