Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto2g2031 | TTGGTGTTTCGGAGTCGATTACCGCGTAAAATCCGGGAGAAAGCCATGCAGAGCCAGCTTGTGTGTAGTGGATGCAGGAGCATTTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGCGCATTGTGCAGCACAATTACCTCTGTTCCTCCACCTGGAATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGAACGTTGCTAATGTATACTCGCGGAGCTACAAGTGTGAGATGTTCCTGTTGTCAAACTGTAAACCTTGCCTCAGCATCTAACCAAGTCGCTCATATCCACTGTGGGAATTGCCGGACAACACTAATGTACCCATTTGGTGCTCCATCTGTCAAATGTGCAGTTTGTCAGTATATTACTAATGTCAGTAATTGTTGTAGTGCTAGGCGCGTGAAGGTCATGTGCAGGGAGACTCTTCGGTTTGTCAATGGACTTCGTTTTGAGATTCAAAATGAACTTAAATTGAATTTTCTTGATTCCATAGAAACAACTTACCATAGGGCCCTTGAAGTAGAGTCTCTGTCTAGGTACACATCTGTTAGGTGTTTCATTGCCATTGGACCAGAATTTAGACCAACTCACAATTCTGCGTCAGCTAGCCGTTCTGTGGGAGTATCACAACCTAAGGAAACTTCTGTGTACCCTTCCAATCATTGGATTGAATCTAAAAGTCAAGCTCTCGCTCTAGTGGTCCCACCATAG | 714 | 0.444 | LVFRSRLPRKIREKAMQSQLVCSGCRSILLYPRGATNVCCALCSTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCQTVNLASASNQVAHIHCGNCRTTLMYPFGAPSVKCAVCQYITNVSNCCSARRVKVMCRETLRFVNGLRFEIQNELKLNFLDSIETTYHRALEVESLSRYTSVRCFIAIGPEFRPTHNSASASRSVGVSQPKETSVYPSNHWIESKSQALALVVPP | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto2g2031 | 237 | PANTHER | LSD1-LIKE PROTEIN | 16 | 133 | - | - | |
Sto2g2031 | 237 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 19 | 49 | IPR005735 | - | |
Sto2g2031 | 237 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 96 | 125 | IPR005735 | - | |
Sto2g2031 | 237 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 58 | 87 | IPR005735 | - | |
Sto2g2031 | 237 | Pfam | LSD1 zinc finger | 61 | 85 | IPR005735 | - | |
Sto2g2031 | 237 | Pfam | LSD1 zinc finger | 99 | 123 | IPR005735 | - | |
Sto2g2031 | 237 | Pfam | LSD1 zinc finger | 22 | 46 | IPR005735 | - | |
Sto2g2031 | 237 | PANTHER | PROTEIN LSD1 | 16 | 133 | IPR040319 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto2g2031 | Sto-Chr2 | 34103940 | 34112153 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Sto2g2031 | zf-LSD1 | 2.5e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto2g2031 | - | - | mtr:MTR_8g089310 | 221.476 |