Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2030 atgccaAGAGTATTCTTAGCAAGGCAACTGAATACTTTGCAGGAGTATCCTTCTAggcaaaattcaaaaaatgatAATACACTTGAATCTTCTGGAAGTCCCCGAAGTAGAAAGATAACAGCCAGATGGGACCCAAATGAAGCATGCAGGCCTACAATTGATGATGCACCTGTGTTTTATCCAACTGTTGAGGAATTTGAGGACACACTTGGCTACATTGCAAAGATACGTCCCCTAGCTGAACCTCATGGTATATGCAGGATTGTACCTCCTGCTTGCTGGGTTCCACCCTGCCCCCTTAAGGAGAAAAATTTATGGGAAAACGCCAAATTTTCTACCCGCATTCAACAAATTGATTTGCTCCAAAATAGGGAACCCATGAGAAAGAAAAGGGGAAGGAAACGAAAACGTAGAAAGCACTCAAAAACAGGAACTTGTAGGAGACGCGCCAATTCAGGTTTGGAAGCTAATGTAGCTTCTGAACCTGAAGAAAAATTTGGTTTCCAATCAGGATCAGACTTCACACTTGCAGATTTTCAGCGATATGCTGATTTCTTTAAGGAATGCTACTTTGGGTTAAAGGATGCTAAAGAAGACCTAAATATTACATATGATAATGACCAGAAGAGATGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACAGATGAAGTTGAgGTGTATTATGGAGCTGACTTGGAAATTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAAAGTGGTTTGGATCAGTATGCCCTCTCTGGATGGAATCTCAATAACTTCCCACGACTTCCTGGTTCTGTACTATGTTTTGAAGGAAGTGATATTTCGGGAGTTCTTGTGCCTTGGCTATATGTTGGAATGTGCTTTTCATCTTTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCTAAAGTATGGTATGGAGTACCTGGAAGCCATGCCTCAGCTTTGGAAGATGCGATGAAGAAGCATTTACCTGATCTATTTGAAGAACAACCAAATCTACTCAATGAACTGGTTACACAACTAGCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTATATCGCACTGTTCAACATTCTGGGGAATTCGTTATTACCTTTCCAAGGGCATACCATTCTGGCTTCAATTGTGGTTTCAATTGTGCAGAGGCTGTGAATGTGGCCCCTGTTGATTGGTTAGTGCATGGCCAGAATGCAGTTGAGCTTTACAGTATGCAACGTCGTAAGACATCAATATCACACGACAAATTGTTACTAGGATCAGCTCAGGAAGCTGTACGAGCTCTTGCAGAGCTAGAGCTTGGAAAGGAAACTTCAAAATATTTGAAATGGAGAAGTGTCTGTGGGAAGGATGGCCTTCTTACGAAGGCAATTAAGACAAGGATAAAGATGGAAGAGGAGAGGTTAGAATGTTTTCCAGCTCATTTGAAGTTGCTGAAGATGGATAATGACTTTGATATGGATAAGGAAAGAGAATGCTTCTTTTGTTTCTATGACTTGCACCTGTCTGCTGCAGGTTGCAAGTGCTCTCCTGACAAATATTCTTGTCTTCAACACTCAAACATGTTTTGTTTATGCGGAATGGATGAAAGATTTGTTCTTGTTCGTTATACTATAAATGAGCTAAATAAATTAGTTGAAGCATTAGAAGGGGAATCAGATGCTATTAAATTGTGGGTAAATAAAATTTCTGGAAATGATTCTGCCGATAATGAGGATGTTTGCACAGTTAAGCCAGAATTGGAGAAAGATTTGTTCAATACGAGGAGTCATGAAGAAAGAGAAAGCTCATCTTGTGCAGAAATCAAGAAGTCAAATGTAAATGCACCTAACAGTCCTTGCAGTAATATTTCTTCAGAGTTAGTCCAGTCAGAGCTTCATCGTAGAACTTTTAGTTTATCACATGGCACTATAGATAGTCGTATTGGCAATGTAAATGATAGAAATTTGGTCAAGGGCAATGAAGTTAAGGCAGAGCTGACAGGGTCTATGGATTTGAATGTTGATATTATGTCTGGAGAAAGTGGAAATTGTAGCTTGCTTGCTGATAAACATCAAAATAAGGGAATGGCCAAGGAAAAAGTCTGTTATTTAGATGGAGGAAAGGAACAAGACAAGATGGAACTTGAGGATGACAATAATCTATCAGACTCTTTTGCTCCTCTGAAGAATGAATATCCATCGTGTTCAAGGGATGCTTGCAATTCTAGTTTATTTCATGGGGGTAAGTTGTTTGGGGTTGATCTGCAAATGCATCCAGATGTGGAAGTGCCACCAAGCATTGAAGTTAAAATGGAAGGTATGGAAACCTCCAATACCAATATACCATTTACAAACCAAAAATACCTAATGCAAAACCTTTGCAATTCTGTGGAGCCTATATGTTTGGGCTCTGTTGTCTATGGAAAGCTGTGGTGCACTAAGCATGCAATATTTCCAAAAGGATTCAAGAGCCGTGTTAAGTTTTTTAGCATGCTTGATCCAACAAGAATCTGTAGCTATATTTCTGAAGTTCTTGATGCTGGGTTTCTTGGGCCAATTTTCAAGGTTACCATGGAAGAGCATCCAAGTGTGGTTATCACAAACATCTCAGCAGAGAAGTGCTGGCAATGGATTCTAGATAGAGTAATCGGTGAAGTATTAAGGCGGAAGAATCTAGGGGAACTTGAACTTCCCCCCTTGGAACTCTTGCAAAGCATTGATGGTCCTAAAATGTTTGGATTCCTTTCCCCTTCTATtattcagGCCATTGAAGCTCAAGATCCTAGTCATCAATGCAAGGAGTACTGGAATCACAAGGAAGCTGTATCTGAATCTTCACCCAGTAGCAGTCATCATGGTTCAAGTAGTCCTTCTGGTAACATCAATTTGATGAAGCAGGATCATGAGAATCTAAATATGAGAAGTGGTCATGGTAAATCATTTGATGAAATGAAATCAATATTAGAAGGATTGTTAAGAAAGGCTAATCCCGATGAGTTAACAACATTGCATAAGTTATTCATCTCTGACGAACAGAGTGTTCAGAGGAGGGTGGAACTTCTAGAACTGATAGAAGAGATCCAGAAAAATGCTTGTAGATAA 3159 0.397 MPRVFLARQLNTLQEYPSRQNSKNDNTLESSGSPRSRKITARWDPNEACRPTIDDAPVFYPTVEEFEDTLGYIAKIRPLAEPHGICRIVPPACWVPPCPLKEKNLWENAKFSTRIQQIDLLQNREPMRKKRGRKRKRRKHSKTGTCRRRANSGLEANVASEPEEKFGFQSGSDFTLADFQRYADFFKECYFGLKDAKEDLNITYDNDQKRWEPSVEDIEGEYWRIIEQPTDEVEVYYGADLEIGALGSGFPKASSLTKSGLDQYALSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEDAMKKHLPDLFEEQPNLLNELVTQLAPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSMQRRKTSISHDKLLLGSAQEAVRALAELELGKETSKYLKWRSVCGKDGLLTKAIKTRIKMEEERLECFPAHLKLLKMDNDFDMDKERECFFCFYDLHLSAAGCKCSPDKYSCLQHSNMFCLCGMDERFVLVRYTINELNKLVEALEGESDAIKLWVNKISGNDSADNEDVCTVKPELEKDLFNTRSHEERESSSCAEIKKSNVNAPNSPCSNISSELVQSELHRRTFSLSHGTIDSRIGNVNDRNLVKGNEVKAELTGSMDLNVDIMSGESGNCSLLADKHQNKGMAKEKVCYLDGGKEQDKMELEDDNNLSDSFAPLKNEYPSCSRDACNSSLFHGGKLFGVDLQMHPDVEVPPSIEVKMEGMETSNTNIPFTNQKYLMQNLCNSVEPICLGSVVYGKLWCTKHAIFPKGFKSRVKFFSMLDPTRICSYISEVLDAGFLGPIFKVTMEEHPSVVITNISAEKCWQWILDRVIGEVLRRKNLGELELPPLELLQSIDGPKMFGFLSPSIIQAIEAQDPSHQCKEYWNHKEAVSESSPSSSHHGSSSPSGNINLMKQDHENLNMRSGHGKSFDEMKSILEGLLRKANPDELTTLHKLFISDEQSVQRRVELLELIEEIQKNACR 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2030 1052 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1050 - -
Sto2g2030 1052 SMART fyrc_3 872 964 IPR003889 GO:0005634
Sto2g2030 1052 Pfam F/Y rich C-terminus 870 957 IPR003889 GO:0005634
Sto2g2030 1052 Gene3D - 813 952 - -
Sto2g2030 1052 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Sto2g2030 1052 Pfam C5HC2 zinc finger 518 570 IPR004198 -
Sto2g2030 1052 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Sto2g2030 1052 Gene3D Cupin 41 413 - -
Sto2g2030 1052 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Sto2g2030 1052 MobiDBLite consensus disorder prediction 960 982 - -
Sto2g2030 1052 SMART cupin_9 263 429 IPR003347 -
Sto2g2030 1052 MobiDBLite consensus disorder prediction 957 982 - -
Sto2g2030 1052 SUPERFAMILY Clavaminate synthase-like 268 450 - -
Sto2g2030 1052 MobiDBLite consensus disorder prediction 127 146 - -
Sto2g2030 1052 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1050 - -
Sto2g2030 1052 SMART JmjN_1 55 96 IPR003349 -
Sto2g2030 1052 ProSiteProfiles FYR domain FYRN motif profile. 808 866 IPR003888 GO:0005634
Sto2g2030 1052 MobiDBLite consensus disorder prediction 17 42 - -
Sto2g2030 1052 MobiDBLite consensus disorder prediction 17 37 - -
Sto2g2030 1052 Pfam F/Y-rich N-terminus 819 863 IPR003888 GO:0005634
Sto2g2030 1052 Pfam jmjN domain 57 90 IPR003349 -
Sto2g2030 1052 ProSiteProfiles FYR domain FYRC motif profile. 868 958 IPR003889 GO:0005634
Sto2g2030 1052 SMART fyrn_3 822 866 IPR003888 GO:0005634
Sto2g2030 1052 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2030 Sto-Chr2 34080462 34088430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2030 810 981 JUMONJI Transcription Factor Family AT1G30810 54.070 3.25e-50 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto2g2030 JmjC 1.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2030 - - gmx:100784581 1403.27