Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2021 TTGACGTggttgaattttgaatttaatcATCTCTCTGGACCTATTCCCCCAACTATAGGAAGTGGCCTTGCCAACCTGGAGGTATTGGATCTAGATTCAAATCAATTTATAGGAAAAATCCCAAAGAGCATATCCAATGCTTCAAAGCTTATTCATTTAAATCTGGGATTGAATAAATTTAGTGGAGTTATTCCCATTGTACTTGGAAATTTAACCAACTTGATTGAAATAAAGTTATACGGGAATGATTTGAATGGACTGATTCCTACTACAATTAATAAACTGCAAGGTCTTCAATTTTTGGATCCTAGCAACAACAGATTGAAAGGGTGCGTCATAGATGAACTTTTCCAAATTAGAAGTTTGAGCGAATTGCATCTAGCCTACAATATGTTTTCAGGATTGCTTCCACAGTGCCTTGAGAATCTTACCTTTTTGCaaaagttggatttgagttctaACAAATTAGTTTCTCATATACCCCATTCTATTTGGAGTCTCAAAGATATCGTTGTGGTAGATTTATCCTCCAATGCCTTGAATGGAACAATTCCACTTGAGATATCGAGCTTGAGAGCACTTACATTGTTGAACTTGTCAAACAATCAAATTTCAGGGAACAATCCTCCAATCGTTGGTAGCTTACAAACTTTACAAAATTTGTCTTTAGAGAATAACAGATTGAATTGGACAATTCCTGAATCACTTGGTAGTATGATAAGCATAGAGTTCTTGGATCTCTCCCAAAATTATTTGTATGGAGTGATTCCAAAGTCCTTAGAGTCACTTGTCCATTTGAAATATATTAACCTTTCCTATAATTTGTTGCATGGAGAAATTCCAAGTGGTGGGccttttacaaactttacagCGGGATCTTTTGTGATGAATGAAGATCTTTGTGGGAAGCCCCAACTACAGATGCTAGCTAGGGTATCCTACTATGAACTTCTACAAGGAACAAATGGATTTGATGAGTGCAATTTTCTTGGACAAGGTAGTTTTGGATCTGTATACAAAGGAATTCTTTCAAGTGGACAGATAGTtgttgttaaaatatttaaattagacTTGGAAGAAGCTTTAAGGAGTTTTGATACTGAATGCACGGCCATTTGCAATTTGCGTCATTGCAATCTCGTCAAGATCATCAACAGTTGTTCAAATGTTGATTTCAAATCTCTAATAATGGAATTCATGCCGAATGGAAGTCTTGAAAGATGGCTATATTCTCATAACTACTGCTTAGATATCTTGCAAAGATTGAACATAATGATTGATATAGCATCAGCATTAGAGTATCTTCATCATGGTTCTTCTACACCAATAGTTCATTGTGACGTAAAACCAAGCAATGTTTTGTTGGACGAAGATATGGTAGCTCATCTTAGTGATTTTGGTATTTCCAAACTATTAGGTGAAGAGAAATTGCAAATTTATACGAAGACTTTTGCTACAGTTGGCTATATGGCACCAGAGTATGGATTAAAAGGAGTTGTTTCTATGAAAGGAGATGTATATAATTATGGTGTCATGCTGATGGAAGTGTTTATAAAAAAGAAGCCAACAAATGATATGTTTGTCGAAGGTCTAAGTTTGAAAGATTGGGTTAGCAAATCAACACCACATTCAATAGTCAATGTTTTGGATACAAATTTATTGCAAAGAGACCATCGAATTGGTAACATATTGTTaaatatatcatcaatttttGAGTTAGCCTTGAATTGTTGTATCGATCTACCTGAGAAACGAATGAATATGGCTGATGTCATGATGTCGTTGGAAAAAATCAAAGCCATGATTATGTAA 1812 0.3361 LTWLNFEFNHLSGPIPPTIGSGLANLEVLDLDSNQFIGKIPKSISNASKLIHLNLGLNKFSGVIPIVLGNLTNLIEIKLYGNDLNGLIPTTINKLQGLQFLDPSNNRLKGCVIDELFQIRSLSELHLAYNMFSGLLPQCLENLTFLQKLDLSSNKLVSHIPHSIWSLKDIVVVDLSSNALNGTIPLEISSLRALTLLNLSNNQISGNNPPIVGSLQTLQNLSLENNRLNWTIPESLGSMISIEFLDLSQNYLYGVIPKSLESLVHLKYINLSYNLLHGEIPSGGPFTNFTAGSFVMNEDLCGKPQLQMLARVSYYELLQGTNGFDECNFLGQGSFGSVYKGILSSGQIVVVKIFKLDLEEALRSFDTECTAICNLRHCNLVKIINSCSNVDFKSLIMEFMPNGSLERWLYSHNYCLDILQRLNIMIDIASALEYLHHGSSTPIVHCDVKPSNVLLDEDMVAHLSDFGISKLLGEEKLQIYTKTFATVGYMAPEYGLKGVVSMKGDVYNYGVMLMEVFIKKKPTNDMFVEGLSLKDWVSKSTPHSIVNVLDTNLLQRDHRIGNILLNISSIFELALNCCIDLPEKRMNMADVMMSLEKIKAMIM 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2021 603 SMART serkin_6 324 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2021 603 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Sto2g2021 603 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Sto2g2021 603 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 66 - -
Sto2g2021 603 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 67 308 - -
Sto2g2021 603 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 310 602 - -
Sto2g2021 603 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2021 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 66 - -
Sto2g2021 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 67 308 - -
Sto2g2021 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 310 602 - -
Sto2g2021 603 SMART LRR_typ_2 71 94 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 143 167 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 263 287 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 119 142 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 23 47 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 215 239 IPR003591 -
Sto2g2021 603 SMART LRR_typ_2 191 214 IPR003591 -
Sto2g2021 603 Pfam Leucine Rich Repeat 25 46 IPR001611 GO:0005515
Sto2g2021 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Sto2g2021 603 Gene3D Transferase(Phosphotransferase) domain 1 400 602 - -
Sto2g2021 603 Gene3D Phosphorylase Kinase; domain 1 308 399 - -
Sto2g2021 603 Gene3D Ribonuclease Inhibitor 1 307 IPR032675 -
Sto2g2021 603 SUPERFAMILY L domain-like 1 311 - -
Sto2g2021 603 SUPERFAMILY Protein kinase-like (PK-like) 306 596 IPR011009 -
Sto2g2021 603 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Sto2g2021 603 Pfam Protein kinase domain 327 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2021 Sto-Chr2 33997815 34000023 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2021 9 599 Receptor kinase-like Gene Family AT3G47090 33.386 7.49e-99 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2021 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2021 - K13420 mtr:MTR_8g465340 600.127