Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g2014 ATGATTCCTACTACAATCAATAAATTGCAAAGTCTTCAATTTTTGGATCTTAGTAATAACATATTGAAAGGCCACATCATAGATGAACTTTGCCAAATTAGAAGTTTGAGTGAGTTGCGTCTAGCTTACAATGTGTTTTCAGGATTGATTCCGAGATGCCTTGAGAATCTTACTTCTTTGCAAAAGTTGAATTTGAGTTCTAACAAATTAGTTTCTCATATACCCCATTCTATTTGGAGTCTCAAAGATATCATTGTGATAGATTTATCCTCCAATGCCTTGAAAGGAAAAATTCCACTTGAGATTTCGAGCTTGAGAGCACTTACGTGGTTGAACTTgtcaaacaatcatatttttggaaacattcCTCCAACCATTGGCGGCTTACAAACTTTACAAAGTTTATCTTTGGAGCATAACAAATTGCAGGGGTCAATTCCTGAATCATTTGGTAGCATAATAAGCATGGAGTTCTTGGATCTTTCCCAAAATTATTTGTCTGGAGTGATTCCAAAGTCTTTAGAGTCACTTGTCCATCTCAAATATATTAACCTTTCATATAATTTATTGCACGGAGAAATTCCAAGTGGTGGGccttttacaaactttacagCTGAATCTTTTGTGATGAATGAAGATCTTTGTGGGAAGCCCCAACTATGGGTCAAACCATGTAAAAAGGGAAGCGGGCAGAGGTCAACTAAAGGCATGCTTTTGATCAAATGCTTATTGCCTATCATGTTGGCGGTGATTATAATTGCTTCATGCATAATGTTTCTGAAACATAAGAGAAATGATGCTAATGATTCAACTAATCGGGATCTATTAAGTTTGGAGATGCCAGTTAGGATATCCTACTATGAACTTCTACAAGGAACAAATGGATTTGATGAGTGCAATTTTCTTGGACGAGGTAGTTTTGGATCTGTATACAAAGGAATTCTTTCAAGTGGACAGATGGTTGCagttaaaatatttaacatagaCTTGGAAGAAGCTTTAAGGAGTTTTGATGCTGAATGCACTGCCATTTGCAATTTGCGTCATCGCAATCTTGTCAAGATCATCAGCAGTTGTTCAAATGTTGATTTTAAATCTCTAATAATGGAATTTATGCCAAATGGAAGTCTTGAAAGATGGCTATATTCTCATAACTACTGCTTAGATTTCTTGCAAAGGTTGAACATCATGATTGATATAGCATTAGCATTGGAGTATCTTCATCATGGTTCTTCTACACCAATAGTTCATTGTGACGTAAAACCAAGCAATGTTTTGTTGGATGAAGATATGGTAGCTCATCTTAGTGATTTTGGTATTTCCAAACTATTAGGTGAAGAGAAATTGCAAATTTATACCAAGACTTTTGCTACAGTTGGGATATATGGCGCCAGaAGCCTCCACGCAcgccatttcttttcttttcttgctctcatcttctccttctctcatcatcatcactctACTCCATCCCTCCCACCAGAAGCTCCACCGTCATCGGCACGTGCTAAAGGAGGCTTCACATATGCAAATACTGTCTGCTTTAAGCTGCTGGATTCGGGGGCCGTTGGTGATGGAGAACCTgtctttgatatctttccagaGATCCTGTGCGACTTCATAGTGGGAAATTGTAGAGCGTAA 1644 0.3473 MIPTTINKLQSLQFLDLSNNILKGHIIDELCQIRSLSELRLAYNVFSGLIPRCLENLTSLQKLNLSSNKLVSHIPHSIWSLKDIIVIDLSSNALKGKIPLEISSLRALTWLNLSNNHIFGNIPPTIGGLQTLQSLSLEHNKLQGSIPESFGSIISMEFLDLSQNYLSGVIPKSLESLVHLKYINLSYNLLHGEIPSGGPFTNFTAESFVMNEDLCGKPQLWVKPCKKGSGQRSTKGMLLIKCLLPIMLAVIIIASCIMFLKHKRNDANDSTNRDLLSLEMPVRISYYELLQGTNGFDECNFLGRGSFGSVYKGILSSGQMVAVKIFNIDLEEALRSFDAECTAICNLRHRNLVKIISSCSNVDFKSLIMEFMPNGSLERWLYSHNYCLDFLQRLNIMIDIALALEYLHHGSSTPIVHCDVKPSNVLLDEDMVAHLSDFGISKLLGEEKLQIYTKTFATVGIYGARSLHARHFFSFLALIFSFSHHHHSTPSLPPEAPPSSARAKGGFTYANTVCFKLLDSGAVGDGEPVFDIFPEILCDFIVGNCRA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g2014 547 PRINTS Leucine-rich repeat signature 12 25 - -
Sto2g2014 547 PRINTS Leucine-rich repeat signature 57 70 - -
Sto2g2014 547 Gene3D Ribonuclease Inhibitor 1 233 IPR032675 -
Sto2g2014 547 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 460 - -
Sto2g2014 547 Gene3D Transferase(Phosphotransferase) domain 1 372 471 - -
Sto2g2014 547 SUPERFAMILY L domain-like 2 222 - -
Sto2g2014 547 SMART serkin_6 296 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2014 547 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 460 - -
Sto2g2014 547 Gene3D Phosphorylase Kinase; domain 1 257 371 - -
Sto2g2014 547 SMART LRR_typ_2 129 152 IPR003591 -
Sto2g2014 547 SMART LRR_typ_2 57 81 IPR003591 -
Sto2g2014 547 SMART LRR_typ_2 105 128 IPR003591 -
Sto2g2014 547 SMART LRR_typ_2 33 56 IPR003591 -
Sto2g2014 547 SMART LRR_typ_2 177 201 IPR003591 -
Sto2g2014 547 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Sto2g2014 547 ProSiteProfiles Protein kinase domain profile. 296 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2014 547 SUPERFAMILY Protein kinase-like (PK-like) 275 459 IPR011009 -
Sto2g2014 547 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Sto2g2014 547 Pfam Leucine rich repeat 59 118 IPR001611 GO:0005515
Sto2g2014 547 Pfam Protein kinase domain 299 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto2g2014 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g2014 Sto-Chr2 33882606 33891875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g2014 2 464 Receptor kinase-like Gene Family AT5G20480 37.843 2.51e-98 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto2g2014 Pkinase 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g2014 - K13420 mtr:MTR_0070s0020 538.495