Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g1086 ATGGGTGCTGATGAGCAAAACAATCACAATATGGAGGAAGGAACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCGTTGGTTATTCTTGATAAAGTAAAGGGACCTAAATATCAAGAGATTGTCAATATTCGATTAGGAGATGGATCTACTCGCCGTGGGCAAGTTCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGTATTGACAACAAATTTACGACTGTGCAATTCACTGGAGAGGTGTTGAAAACTCCTGTCTCGCTGGATATGCTTGGGCGCATATTTAATGGTTCTGGAAAGCCAATTGATAATGGTCCTCCCATATTGCCTGAGGCATACTTGGATATATCAGGAAGTTCCATCAACCCTAGCGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCCACGATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATTCCTCTTTTCTCGGCTGCTGGTCTTCCCCATAATGAGATTGCTGCTCAGATATGTCGTCAGGCTGGCTTAGTCAAGCGATTGGAGAAATCTGATAATCTTCTTGAGGGTGGGGAAGAGGACAATTTTGCCATTGTGTTTGCAGCCATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAGCGAGACTTTGAGGAGAATGGTTCAATGGAGAGAGTGACCCTTTTTCTTAATCTGGCAAATGATCCTACCATTGAGCGTATCATCACTCCTCGCATTGCTCTTACTACTGCTGAATATCTAGCATATGAATGTGGGAAGCACGTTCTTGTGATACTCACCGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGAGAGGAAGTGCCTGGAAGGCGTGGATATCCCGGTTACATGTACACAGATCTTGCAACAATCTATGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCCATTACTCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACGGGATATATTACTGAGGGGCAGATTTACATTGATAGGCAGCTGCATAACAGACAGATATACCCACCAATCAATGTCCTTCCATCACTGTCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACAAGAAGAGATCATTCTGATGTGTCCAACCAGCTCTATGCTAACTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATCTGCTGTATCTGgaatttttggataagtttgAGAGAAAGTTTGTTACCCAAGGAGCTTATGACACTCGCAACATCTTCCAGTCCCTAGATCTTGCATGGACTTTGCTTCGGATCTTCCCCCGTGAGCTTCTTCACCGTATCCCAGCAAAAACGCTCGATCAATTTTACAGTCGGGATGCCGGGAATTGA 1470 0.4354 MGADEQNNHNMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g1086 489 Gene3D - 30 488 - -
Sto2g1086 489 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 91 IPR004100 GO:0046034|GO:1902600
Sto2g1086 489 Hamap V-type ATP synthase beta chain [atpB]. 19 487 IPR022879 -
Sto2g1086 489 CDD ATP-synt_V_A-type_beta_N 21 92 - -
Sto2g1086 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 489 IPR022879 -
Sto2g1086 489 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 21 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Sto2g1086 489 PIRSF V-ATPsynth_beta/V-ATPase_B 12 489 IPR022879 -
Sto2g1086 489 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 148 378 IPR000194 GO:0005524
Sto2g1086 489 CDD ATP-synt_V_A-type_beta_C 388 482 - -
Sto2g1086 489 CDD V_A-ATPase_B 93 380 - -
Sto2g1086 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 384 IPR027417 -
Sto2g1086 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 5 489 - -
Sto2g1086 489 ProSitePatterns ATP synthase alpha and beta subunits signature. 369 378 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g1086 Sto-Chr2 9507178 9512074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g1086 1 489 Primary Pumps ATPases(2) AT4G38510 97.137 0.0 965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g1086 K02147 - rcu:8283659 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g1086 2 9507178 9512074 Sto2g1086 2 9507178 9512074 ECH