Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g1066 ATGGATTTTGATGAATACGAGTACTTAGAGAATACAGTTGAAAATCCTGAACTTCAGAAGAAGGAGAAAGCTAATGGTAGGGATGGAACTGTGAAATCTGAAGAGAGGGATCATAGTCGAAGTTCCAAGCATAAAGCTAGTGAGAAGGATAATGATATCGACCACTATTCCAAGCAGTTAAAATCTGGAGATGATTCTCATGATTATGATAATCATAAAGAAAGAGGGTCATCTCGTCATCGTTCACAGTCCAGAGATGGAGACAAGGAGAAGAGTCAGCACAGAAGCAGCCGTGACAGTGACCGAGAAAGAGACAGAAAAGACCGGGGGAGTGAGAGtgaaagagaaagggagagagaTCACTCACGTAGAAGCAGAAGTATATCTGAAAGGCATCGGAGTGATTTGgatgaaagagagagagagaggagtcgTGACAGGGACTATAAAGACAGAGAAAGAAGCAGGGACAAGGGAGACAGAGAAATGGGGCGGGAATCTAGGGAGCGAGATAGAGATAGCAGACGCCATaaagagaagaaggaagaagctgCAGAACCTGAGGCTGATCCTGAACGGGATCAGAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCGAGGGCTGGCAAGGTGCGAGATGTTCGGCTGATAATGGACCGCAATTCCAGACGATCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAGAAGAATTTGGTTCAGTCTACTACAGCTATATCTAGTGGATCCACTGGACTTACTGGCCCTTATTCTGGTGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTTCAGTATTACAGAAGCTGATCTTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGATTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAAATGGGCAACTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAAACTGGAATGCTAGAAGTTGGAGGAAATACTGGTgattttgatgatgatgatggtggtagCTTGTCCCTGAATGCATGTTCTCGAGCACTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAGGTATGACTGGTTCCCTAGGAGTTGCCAACAACACAGGTCTTAATCTACCAGCAGCCACAGTTCTGGGAGCTGCACCTGTGGGTTCTTCAATGGTTTCTCCCCTTACTGCTTCTGTTCCTTCGGTAGGTGGACTGCCAGGTGGAGGTCTCCAACTTCCCACGGCTTCTGCTACAATTCCTACCATTGATACCATTGGTGTTCCAAGTGAATGCTTATTGCTAAAGAACATGTTTGATCCAAAAGATGAGAAGGAACCAGATTTTGATTTGGATATCAAAGAAGATGTTGAAGCTGAATGCTCCAAGTTTGGAAAGTTACAACACATATATGTTGACAAGAATAGTGCTGGCTCTGTCTACTTACGATTTGAAAATACGCAATCTGCAATAAACGCACAGCGGTCTCTGCATGGTAGATGGTTTGCTGGGAAGATGATTACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGATAAATTCCCAGACAGCAGATAG 1755 0.4285 MDFDEYEYLENTVENPELQKKEKANGRDGTVKSEERDHSRSSKHKASEKDNDIDHYSKQLKSGDDSHDYDNHKERGSSRHRSQSRDGDKEKSQHRSSRDSDRERDRKDRGSESERERERDHSRRSRSISERHRSDLDERERERSRDRDYKDRERSRDKGDREMGRESRERDRDSRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAISSGSTGLTGPYSGGARRLYVGNLHFSITEADLRGVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQTGMLEVGGNTGDFDDDDGGSLSLNACSRALLMQKLDRSGTASGMTGSLGVANNTGLNLPAATVLGAAPVGSSMVSPLTASVPSVGGLPGGGLQLPTASATIPTIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLQHIYVDKNSAGSVYLRFENTQSAINAQRSLHGRWFAGKMITASFMVPQSYEDKFPDSR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g1066 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 514 566 IPR000504 GO:0003723
Sto2g1066 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 265 IPR000504 GO:0003723
Sto2g1066 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 371 IPR000504 GO:0003723
Sto2g1066 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 580 - -
Sto2g1066 584 Gene3D - 285 380 IPR012677 -
Sto2g1066 584 Gene3D - 128 282 IPR012677 -
Sto2g1066 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 490 573 IPR000504 GO:0003723
Sto2g1066 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 377 IPR000504 GO:0003723
Sto2g1066 584 PANTHER CC1-LIKE SPLICING FACTOR 1 580 - -
Sto2g1066 584 CDD RRM1_RBM39_like 197 269 - -
Sto2g1066 584 CDD RRM2_RBM23_RBM39 302 373 - -
Sto2g1066 584 MobiDBLite consensus disorder prediction 14 194 - -
Sto2g1066 584 SMART rrm2_1 301 373 IPR003954 GO:0003676
Sto2g1066 584 SMART rrm2_1 491 569 IPR003954 GO:0003676
Sto2g1066 584 TIGRFAM SF-CC1: splicing factor, CC1-like family 72 582 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sto2g1066 584 CDD RRM3_RBM39_like 489 571 - -
Sto2g1066 584 Gene3D - 485 584 IPR012677 -
Sto2g1066 584 SUPERFAMILY RNA-binding domain, RBD 486 570 IPR035979 GO:0003676
Sto2g1066 584 SUPERFAMILY RNA-binding domain, RBD 297 391 IPR035979 GO:0003676
Sto2g1066 584 SUPERFAMILY RNA-binding domain, RBD 189 294 IPR035979 GO:0003676
Sto2g1066 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Sto2g1066 584 SMART rrm1_1 491 569 IPR000504 GO:0003723
Sto2g1066 584 SMART rrm1_1 301 373 IPR000504 GO:0003723
Sto2g1066 584 SMART rrm1_1 197 269 IPR000504 GO:0003723
Sto2g1066 584 MobiDBLite consensus disorder prediction 1 194 - -
Sto2g1066 584 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 391 508 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g1066 Sto-Chr2 9321316 9329173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g1066 197 363 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 1.03e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g1066 K13091 - gmx:100789839 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g1066 2 9321316 9329173 Sto2g1066 2 9321316 9329173 ECH