Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto2g0981 | ATGTTTCCTTGTGAGTTCTTTGTGAGTGGGTTCTTGACCAGAGATTACCGTGTCTGGCTTCCATCACGTGTGCAACTTCATCTCTTTCATTTGGTGAAACTTCTGAAAAAGATTATTTTGTCTAGTGATAATTATAAGGCTAGCACTTTGATAGCACAATTGTCATCCATGAAATACACTGGCACTAAAGCTGTGCGTGAGCACATTATGCAAATGCAGGACATAGTTGCACAACTTAAGTCCCTGGATATTGAAATTACTGATTCTTTCTTGGTGTTGTTGATCCTTAACTCTCTTCCTTCTCGATTTGGACGTTTTAAAATCACTTATAACACATATAATGAGAATTGGTCAATTAATGAACTATTGTCCATGTGTGTTCAAGAGGAAGGAATGTTGAACTCTGAGAAGGGTGAGGGATCTAATGAGGCTCACATTGTGACAAACACCAATAAGCAaggccataaagggaaaaacaagaagaatgaACTTGCACCTCGTTCTGAAAGGAATAAGCATGATATTAAGTACACTGAGAGTGGACAAAAGCCTGGTCCATTTGCTAAATTCCTTCAAGAGCAAGGTATAGTACCACAATATACCATGCCTGACTCACCTGACATGAATGGTGTAGCTGAAACAAGGAATAGGACAATACTGTTGGACATGGTGAGAAGTATGATGAGTAACTCTAAACTTCCTATATTCTTGTGGAGAGAAGCCTTAAAGACAGCTGTATATATTCAAAATAGGATTCTAACAAAAGCTGTTTCGAAAACACCTTTTGAAATTTGGAAAGGTTGGAAACCTAGTTTGAATCATATACGTGTTTGGGGTTGTCCTGCTGAGGTTAGAGTGTACAATCCACATGAAAAGAAGCTAGACCCTAGGACTATTTCTGCGTATTTTGTTGGTTATGCTGAAAGTTCTAAATGGTATAAGTTTTATTGTCCCACTCATACTTTAAAGTTTGTAGAATCTAGAAATGCAAAGTTTCTTGAGAATGACACATTTAGTGGGAGTGATCAATTTCATGACTTAGTTAATGAGAATGATCATGTGGTAATTCCCACTACCAGTGGTCAAGGTGAAACTATAGTTCTTATTGACTCTCATAAAATTGAAATCATTAGAGAACATAATGTTGTTTCACCCATCCCAAGTGATCATGTGGAAagaaattatgatattttagaAGAGGCACCTCATAATGCTCAAGAGGAACCTCAAGAAGAATTCCATATAGAACAACATCAACCTCCACAAGAGGTTGAATTAAGAAGATCACAAAGGGTCAAGAAGCCTACTATTTCTAATCACTACATGGTAAGTCGTGATTCAACATTACAAGATATAGTTGTTGATTTATCTCTAAGCCGTGATTCAACATTACAAGATATAGTTGTTGATTTATCTCTGAGGATGGAATCATTTTGTCGTAACGAGAATGGTGGTCAACGTGTGAGTAAAAGCAAAAGGCAATACACTGCTCATGATGATGAGCAAAAATCATTTTCCAACGAAGCTTTATATTTGACTTCGTATTTGGAACTCAAGACGCGTGCTATTGGCACAGATGGGCACTTCTATGAGTGTGTGAAGTGTGAAGATGTTGGAAATTTATTGTGCTGTGACACATGTGCTTGTACTTATCATCTCCATTGCCTTAGTCCACCTCTAGAGTGTGTTCCTGAAGAAGATTGGCAATGCCGTAACTGCTATAACATTGACAACCTTTCTGAGGATATGAATAAGGATGCAATAGATACGATGAAGCAACTAGTTGCAGTGAATACTCAATCAAGCCAACTTGGGAAACAGAAACGGGTTAAGCATGATTCCGgacaaaaaggaaaaggaattaTGAAGAACACTCCTCGCAATAAAAAAGGGACCCGTTCAAGTTTAAAAGTAAATGTGCAAATGCGAAGTTCAGATCTTCAAGTGgtcaaatatggtgaaaatgtTCGCTCTGATGCTTTAGCAAATAAGGAAATAGGTGCTCAACGTTCAACTTTAATGACTTCGAGTTGCGAGGGTGTCACCATTCCGATAAAGAAAGTCACTTGCTCTGGATTCGAACTGGATGCTCTATGGGTTGGTGTTCGCCGATATGGTCAAGAGAATTGGGACACCATTTTGGCTGATTCATCTCTGAGAGTTCTGAAGTACAAAACCCCTCaagatttgagaatgaaatGGAAAGAGAAGCTTCACAAAATACTCTCATCATTTCAAAAAGAAACACCAATAGGCATATTGGAAACtcctccattttcttcttcttcaagagTTCGTCCTTCATTTCCAAAGGCTCATAATGATGGTacttatgataattataatatttcgtCTTGTAATTTGGTACCAAATAAGCCCAAATTGTTGTTTGGTGGTCATTTCCCATTTAAATTTAGTGGTGGGTCCAATAATACCAAGAAAATCCTTCTTTCAAGTAGAGGCATGAAGATTGAAGAGAAAGACTAA | 2487 | 0.3591 | MFPCEFFVSGFLTRDYRVWLPSRVQLHLFHLVKLLKKIILSSDNYKASTLIAQLSSMKYTGTKAVREHIMQMQDIVAQLKSLDIEITDSFLVLLILNSLPSRFGRFKITYNTYNENWSINELLSMCVQEEGMLNSEKGEGSNEAHIVTNTNKQGHKGKNKKNELAPRSERNKHDIKYTESGQKPGPFAKFLQEQGIVPQYTMPDSPDMNGVAETRNRTILLDMVRSMMSNSKLPIFLWREALKTAVYIQNRILTKAVSKTPFEIWKGWKPSLNHIRVWGCPAEVRVYNPHEKKLDPRTISAYFVGYAESSKWYKFYCPTHTLKFVESRNAKFLENDTFSGSDQFHDLVNENDHVVIPTTSGQGETIVLIDSHKIEIIREHNVVSPIPSDHVERNYDILEEAPHNAQEEPQEEFHIEQHQPPQEVELRRSQRVKKPTISNHYMVSRDSTLQDIVVDLSLSRDSTLQDIVVDLSLRMESFCRNENGGQRVSKSKRQYTAHDDEQKSFSNEALYLTSYLELKTRAIGTDGHFYECVKCEDVGNLLCCDTCACTYHLHCLSPPLECVPEEDWQCRNCYNIDNLSEDMNKDAIDTMKQLVAVNTQSSQLGKQKRVKHDSGQKGKGIMKNTPRNKKGTRSSLKVNVQMRSSDLQVVKYGENVRSDALANKEIGAQRSTLMTSSCEGVTIPIKKVTCSGFELDALWVGVRRYGQENWDTILADSSLRVLKYKTPQDLRMKWKEKLHKILSSFQKETPIGILETPPFSSSSRVRPSFPKAHNDGTYDNYNISSCNLVPNKPKLLFGGHFPFKFSGGSNNTKKILLSSRGMKIEEKD | 828 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto2g0981 | 828 | ProSiteProfiles | Integrase catalytic domain profile. | 177 | 269 | IPR001584 | GO:0015074 | |
| Sto2g0981 | 828 | CDD | PHD2_CHD_II | 532 | 573 | - | - | |
| Sto2g0981 | 828 | MobiDBLite | consensus disorder prediction | 148 | 179 | - | - | |
| Sto2g0981 | 828 | Gene3D | - | 691 | 766 | - | - | |
| Sto2g0981 | 828 | Gene3D | - | 177 | 279 | IPR036397 | GO:0003676 | |
| Sto2g0981 | 828 | SUPERFAMILY | Homeodomain-like | 694 | 742 | IPR009057 | - | |
| Sto2g0981 | 828 | SUPERFAMILY | FYVE/PHD zinc finger | 526 | 575 | IPR011011 | - | |
| Sto2g0981 | 828 | ProSitePatterns | Zinc finger PHD-type signature. | 532 | 573 | IPR019786 | - | |
| Sto2g0981 | 828 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 522 | 575 | IPR013083 | - | |
| Sto2g0981 | 828 | SMART | PHD_3 | 531 | 574 | IPR001965 | - | |
| Sto2g0981 | 828 | ProSiteProfiles | Zinc finger PHD-type profile. | 529 | 576 | IPR019787 | - | |
| Sto2g0981 | 828 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 485 | 645 | - | - | |
| Sto2g0981 | 828 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 681 | 754 | - | - | |
| Sto2g0981 | 828 | Pfam | gag-polypeptide of LTR copia-type | 34 | 132 | - | - | |
| Sto2g0981 | 828 | MobiDBLite | consensus disorder prediction | 604 | 634 | - | - | |
| Sto2g0981 | 828 | SUPERFAMILY | Ribonuclease H-like | 186 | 263 | IPR012337 | - | |
| Sto2g0981 | 828 | PANTHER | PROTEIN CHROMATIN REMODELING 4 | 485 | 645 | - | - | |
| Sto2g0981 | 828 | PANTHER | PROTEIN CHROMATIN REMODELING 4 | 681 | 754 | - | - | |
| Sto2g0981 | 828 | MobiDBLite | consensus disorder prediction | 156 | 179 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto2g0981 | Sto-Chr2 | 8587016 | 8611404 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto2g0981 | 532 | 573 | PHD Transcription Factor Family | AT1G05380 | 47.619 | 1.33e-07 | 53.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto2g0981 | - | - | vvi:109123503 | 317.775 |