Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0928 ATGGAAGAGTGTACCGGGAGTGCAGAGGAAAGTGAGGTGAAGTGgttcaatgaccagaagggtttTGGCTTCATAACCCCTGACGATGGCGGCGAGGAACTCTTCGTCCACCAGTCTTCGATCCGATCTCAAGGGTTTCGCAGTCTCGGCGATGGCGAATCTGTCGAGTTTCTCATCGAAACCGATTCCGATGGTCGCACCAAGGCTGTTGATGTGACCGGCCCTGAGGAAGGCTCTTTAAACTCAGTTTCACCTTCATTCTCTCGCACTCTTGTACTTTTGCATTCTATGGATTTGTCAAATTGTATCTATTCGTGTTGGGATTTAGAAGCACTTGCCTAA 342 0.462 MEECTGSAEESEVKWFNDQKGFGFITPDDGGEELFVHQSSIRSQGFRSLGDGESVEFLIETDSDGRTKAVDVTGPEEGSLNSVSPSFSRTLVLLHSMDLSNCIYSCWDLEALA 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0928 113 Gene3D - 9 84 IPR012340 -
Sto2g0928 113 PANTHER COLD SHOCK PROTEIN 2 9 82 - -
Sto2g0928 113 Pfam 'Cold-shock' DNA-binding domain 12 74 IPR002059 GO:0003676
Sto2g0928 113 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Sto2g0928 113 CDD CSP_CDS 13 74 IPR002059 GO:0003676
Sto2g0928 113 PANTHER COLD SHOCK DOMAIN PROTEIN 2 9 82 - -
Sto2g0928 113 SMART csp_8 10 75 IPR011129 GO:0003676
Sto2g0928 113 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Sto2g0928 113 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Sto2g0928 113 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Sto2g0928 113 SUPERFAMILY Nucleic acid-binding proteins 13 74 IPR012340 -
Sto2g0928 113 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0928 Sto-Chr2 8001704 8004323 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Sto2g0928 CSD 1.1e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0928 - - fve:101308236 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0928 2 8001704 8004323 Sto2g0928 2 8001704 8004323 ECH