Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0908 ATGGATTGTACAGCTGCCAGGAAAACTCAAAAGGCTGACAGAGAAAAACTGAGGAGGGATCGGCTCAATGAACAGTTTGTAGAGCTGGGTAGCATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTTACTGATACAATTCAATTGCTGAAGGACCTTACCTCTCAAGTTAGTAAACTGAAAGATGAATATGCTATGCTGACTGAAGAATCCCAAGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAGTCAGACATTGAGAGCTTGAATAATCAGCACCAACAACGACTCAGGACTATGTTCCCATGGACTGCAATGGATCACTCAGTTATGATGGCTCCACCTTCGTATCCGTATCCAGTGCCAATGCCGGTCGCAATCCCCCCTGGTTCAATTCCCATGCATCCGCCTATGCAGCCATACCCCTTCTTTGCGAATCAAAATCCTGGGATGATGCCAAATCCCTGTTCAACATTTGTACCCTATATGGCCCCTAATACTCTTGTTGACCATCAATCTATGCAATACGGAACCCCACCAGTTCATCCAGGTAGCCATTCCCATGTGTCAGGTACACAAGATTCCAGAAACAAATCATCCAGGGAGAGCAAGGCTGAAAATAATGAAGGTGCTAATGATGTCACCACAGACCTGGAGCTGAAGACTCCTGGATCTTCTACAGAACAGTTATCTTCTGGGCAAAGAAAATCCAGCAAGTTGTCCATGAAGAGAAGCAGTGGCACAGAAGGGAGTTCATCTGGTAGGTGTTCTTCATCTCATAGCATACAAGATAGCTCATCAAGTAGTGTAGCTGGGAGTAGAAAAGGTCATGAATGA 864 0.4468 MDCTAARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILTDTIQLLKDLTSQVSKLKDEYAMLTEESQELTQEKNDLREEKASLKSDIESLNNQHQQRLRTMFPWTAMDHSVMMAPPSYPYPVPMPVAIPPGSIPMHPPMQPYPFFANQNPGMMPNPCSTFVPYMAPNTLVDHQSMQYGTPPVHPGSHSHVSGTQDSRNKSSRESKAENNEGANDVTTDLELKTPGSSTEQLSSGQRKSSKLSMKRSSGTEGSSSGRCSSSHSIQDSSSSSVAGSRKGHE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0908 287 Coils Coil 46 101 - -
Sto2g0908 287 Coils Coil 5 25 - -
Sto2g0908 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Sto2g0908 287 MobiDBLite consensus disorder prediction 182 287 - -
Sto2g0908 287 SMART finulus 12 62 IPR011598 GO:0046983
Sto2g0908 287 Gene3D - 4 84 IPR036638 GO:0046983
Sto2g0908 287 MobiDBLite consensus disorder prediction 182 203 - -
Sto2g0908 287 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Sto2g0908 287 PANTHER TRANSCRIPTION FACTOR BHLH121 1 284 - -
Sto2g0908 287 CDD bHLH_AtILR3_like 11 85 - -
Sto2g0908 287 PANTHER TRANSCRIPTION FACTOR BHLH121 1 284 IPR044579 GO:0003700|GO:0055072
Sto2g0908 287 MobiDBLite consensus disorder prediction 218 287 - -
Sto2g0908 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0908 Sto-Chr2 7858602 7862406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0908 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.712 1.73e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0908 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0908 - - cam:101491902 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0908 2 7858602 7862406 Sto2g0908 2 7858602 7862406 ECH