Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0798 ATGGAGGTTGTGGTAGCGAAGGCGTTAAAATCGAGTTTGCACAGAGAATTGGCTTTTCTGAAATCGTCGTCTCCGCAAGCTTTCGGCGAGGAAATTTGGTGTTTGAACTCGAACAACGGCGTTGGAGGCGGTGAGGATTTCTCCGTGGATGACCTATTTGACTTCTCTCAGGACGAATTTCAGCATGAATATGGAGTTGTtcaagaggaggaagaagaggacgAGGAGAAGGACGCACTCTCCGATTCGTCTTCGCAGGACCGGAGCGAGGAAGACAGCAATTCCTCCAATTCCTCCTCCGGCGCCGCCGATTCTGACTTCATTTTCTCCGGCGAATTGGCCGTTCCGAACGATGATATTGCAGATTTGGAGTGGGTTTCACACTTCGTGGATGATTCTCTCCCGGAGCTTTCTCTGTTATACCCTGTCCGTTCAGAGCAAACGAAGACCCGGTCCGAACCGGAACCCAGGCCGGGTTTCGCGAGAACTCCTTGTTTTCCCTTCGAATATCCCGTCAAGGCGAGAACCGCCAAGCGCAGAAGAGCCAACGGTCTAGCCTGGTCGTTTAGCCCCTTGCTTTCCCGGCCATCGTCGCCGCCGTCTTCATGTTCATCGGCGTTCTCGTCCACACCGACACTCATCTCCTCCGCCGTCGTCGCCGCCTCCTTTTTCCTCGACGTCAGCCAACCTCCGGCGAAGAAACAGAAGAAAAAGGCCGAACCACAGGCCGCCGCCGCCGGCGGGCCCCCCCAGATTCAGCGTCGGTGCAGCCATTGCCAAGTGCAGAAGACACCGCAGTGGAGAACCGGTCCACTGGGCCCCAAGACTCTCTGTAATGCGTGCGGGGTCCGGTTCAAGTCCGGTCGGCTTTTTCCGGAATACAGACCGGCATGTAGTCCAACCTTCTCGAGCGACGTTCACTCGAACAGCCATCGTAAAGTGTTAGAGATGAGGAAGAGAAAAGAAACAGTTGAACCGGAATGCGCATTGATTGAGACCCAATCAGTTACTCAACTTCTAGATTAA 1026 0.5322 MEVVVAKALKSSLHRELAFLKSSSPQAFGEEIWCLNSNNGVGGGEDFSVDDLFDFSQDEFQHEYGVVQEEEEEDEEKDALSDSSSQDRSEEDSNSSNSSSGAADSDFIFSGELAVPNDDIADLEWVSHFVDDSLPELSLLYPVRSEQTKTRSEPEPRPGFARTPCFPFEYPVKARTAKRRRANGLAWSFSPLLSRPSSPPSSCSSAFSSTPTLISSAVVAASFFLDVSQPPAKKQKKKAEPQAAAAGGPPQIQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSDVHSNSHRKVLEMRKRKETVEPECALIETQSVTQLLD 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0798 341 MobiDBLite consensus disorder prediction 63 103 - -
Sto2g0798 341 MobiDBLite consensus disorder prediction 232 252 - -
Sto2g0798 341 CDD ZnF_GATA 255 303 IPR000679 GO:0006355|GO:0043565
Sto2g0798 341 MobiDBLite consensus disorder prediction 65 80 - -
Sto2g0798 341 Gene3D - 250 324 IPR013088 GO:0006355|GO:0008270
Sto2g0798 341 PIRSF Txn_fac_GATA_plant 22 339 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto2g0798 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 313 - -
Sto2g0798 341 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Sto2g0798 341 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Sto2g0798 341 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Sto2g0798 341 PANTHER GATA TRANSCRIPTION FACTOR 1 329 - -
Sto2g0798 341 PANTHER GATA TRANSCRIPTION FACTOR 1 329 - -
Sto2g0798 341 SMART GATA_3 250 304 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0798 Sto-Chr2 6883106 6884231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0798 8 322 C2C2-Gata Transcription Factor Family AT5G66320 41.049 1.96e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto2g0798 GATA 4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0798 - - adu:107476627 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0798 2 6883106 6884231 Sto2g0798 2 6883106 6884231 ECH
Sto2g0798 2 6883106 6884231 Sto10g0124 10 952148 953227 ECH