Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0796 ATGCGAGAACCCTCTCTCTCTTGCAACAACTTCTCGCGCACATCATCACTAATGGCCTTCACAAACAGTCGGATGCGAAGTGAAGGCAATGGGGTCGATACTTTTAACTTGGAATTTGCTATTAAAGCGAGTGGTCGATTGTTGCTTTTGCAAAATGGGAGATTGCTTCACTGTTTGGCTATCAAATCAGGGTTGGAAGCAGACCTCTTTATTGTGCCTGCGCTTTTAGGATTATATGCTGATTCGAGTTCCCTGAACGATGCCCACAAGCTATTTGAACGATTTTCTTACAGAAGTTCGGTTATGTGGAGTTTGATGATAAAATGGTATTTGAAGTTTTCtcaaaaatctaaaatttttgAGTTATTCTCTAGCATGACTAATCATTATGGCTTACAACGAAATGCTTTTACAATGGAGGGTTTGGTTCGAGCCTATGCTAATGTCTTAGCTTGTAGAGAAGGGAAAGCAGCTCATGGGTTGTGTATAAAGAACAACCTTTTGGTTAATGTCTGCTTGCAGACATCCGTTGTctatatgtatatgaaatgtGGGTTTCTTCGGTATGCAGTTCGAGTGTTTGAAGAAGCCAATGATAAGGATGAGGTGCTATGGACTGCTGTAATTGATGGTTATGCACAAAATGGGAGATTTTTGGAAGGTGTGTCCCTTTTCAGAAAGATGCTGGGAAGCTCAGTTACTCCAAATCCAGTGACATTGGCTTGCGTCCTTCTTGCTTGCTCTGGTGTTGGGTCTTTGAATCAAGGCAAGAGTGTGCATTGTTTTGTGATTAGAAACAAGGTTGACATGGACGTGGATTATGCCATTTCTCCAGCAGAGGAACACTATGCCTGTATGATAGATCTCTTAGTTTATGTTGGCCAAATTGAAGCAGCATTATCCTTAATGTGTAACATGCCTATAAAACCTGGTGTTATAGCTTGGAGAGCTCTCTTGAGTGCATGCAGAATAAACAAACGAGTTGAAATAGCTGAAGAATTAGAAAAGAGACTTTCAATTTTGGAGCTTAATAATCCATCCTCACAGGTCTCACTCTCTGACTCTAACATATATGCTGATGCTACCATGTTGGAAACATTGCAGAGTATATCAATGAAAAAGATTGGAGGAGTGCTTCATAAGACTCGTGACTTTACCTCAATTGAAgaggcacgTGTATATGCAAAGGAGAATGGTCTCTTTTTTATGGAGACTTCTGCCAAAAGTGCAGCCAAtgtgaatttaatattttatgaaatagATTATAACCACCTTCAGTGTAGTGGATACCATGAAATGGCAGTTTTATGCTCAACAAGGGAAAGCTTCCAGATTGAAGATGGTTTTCAAAAAGTATCAGGTTCTCCATGTGGAGCGTGCAAGTTCCTGAGGAGAAAGTGCGCCCCCGATTGCCTATTTGCGCCTTACTTCTGCTCCGACCAAGGTGCTGCGAGATTTGCGGCCATCCATAAGGTGTTTGGTGCCAGCAATGTTTCCAAAATGCTGCTCAATATAGCCCCACGTGATCGGTGTGAGGCTGTGCTCACTATCTCTTACGAAGCCCAGGCTCGGATTAGAGACCCCGTTTATGGCTGCGTCTCTCACATTTACTCTTTGCAACAGCAGGTGGCATACTTGCAGGCACAAGTGATGCAAGCCAAGACTCAACTGGCGCAGAAGAACCTAATGCTAATGGAGCAGGAGCAGCAGCAGCAGTGGGGAGGCGTAGGCGTAGGTGCCAATAATTATATGGTGGGAGGAGGAGGCGCTGCAGATGCAGATGCAaatgcaaataataataataacatgatgatgatgaacccTATGTGTACTCCTCCTCAGAGCTCGCTGGATTCAGTTGAGCAAAGCATGAATATTAACGAGGGAGTGGTTCAGTTTCAAGATGAGCAATTAGTGGCATTCCCCAAGAGAAGGTCCTTCAATAACAATGACTTGAGTGAACTCCAGCAGCTTGCTCTCACCATGATGAGGAACTAA 1998 0.4149 MREPSLSCNNFSRTSSLMAFTNSRMRSEGNGVDTFNLEFAIKASGRLLLLQNGRLLHCLAIKSGLEADLFIVPALLGLYADSSSLNDAHKLFERFSYRSSVMWSLMIKWYLKFSQKSKIFELFSSMTNHYGLQRNAFTMEGLVRAYANVLACREGKAAHGLCIKNNLLVNVCLQTSVVYMYMKCGFLRYAVRVFEEANDKDEVLWTAVIDGYAQNGRFLEGVSLFRKMLGSSVTPNPVTLACVLLACSGVGSLNQGKSVHCFVIRNKVDMDVDYAISPAEEHYACMIDLLVYVGQIEAALSLMCNMPIKPGVIAWRALLSACRINKRVEIAEELEKRLSILELNNPSSQVSLSDSNIYADATMLETLQSISMKKIGGVLHKTRDFTSIEEARVYAKENGLFFMETSAKSAANVNLIFYEIDYNHLQCSGYHEMAVLCSTRESFQIEDGFQKVSGSPCGACKFLRRKCAPDCLFAPYFCSDQGAARFAAIHKVFGASNVSKMLLNIAPRDRCEAVLTISYEAQARIRDPVYGCVSHIYSLQQQVAYLQAQVMQAKTQLAQKNLMLMEQEQQQQWGGVGVGANNYMVGGGGAADADANANNNNNMMMMNPMCTPPQSSLDSVEQSMNINEGVVQFQDEQLVAFPKRRSFNNNDLSELQQLALTMMRN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0796 665 Gene3D Tetratricopeptide repeat domain 268 361 IPR011990 GO:0005515
Sto2g0796 665 ProSiteProfiles LOB domain profile. 455 557 IPR004883 -
Sto2g0796 665 Pfam PPR repeat family 200 246 IPR002885 -
Sto2g0796 665 Coils Coil 550 570 - -
Sto2g0796 665 Pfam PPR repeat 101 127 IPR002885 -
Sto2g0796 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 133 371 - -
Sto2g0796 665 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 267 - -
Sto2g0796 665 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Sto2g0796 665 Gene3D Tetratricopeptide repeat domain 12 152 IPR011990 GO:0005515
Sto2g0796 665 Gene3D Tetratricopeptide repeat domain 153 261 IPR011990 GO:0005515
Sto2g0796 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Sto2g0796 665 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 15 267 - -
Sto2g0796 665 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 133 371 - -
Sto2g0796 665 Pfam Lateral organ boundaries (LOB) domain 456 554 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0796 Sto-Chr2 6866771 6876386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0796 447 665 AS2 family AT2G42430 46.800 5.28e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto2g0796 LOB 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0796 - K13944 gmx:100775787 368.237