Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0788 ATGAAGATAGAGTGTGATGTGTGTGAGAAAGAGGAGGCAACTATCTTCTGTCCGTCCGATGAAGCCGCCCTATGCGACGGCTGTGATCGCACCATCCACAATGCCAACAAGCTTTCACGCAACCATCCTCGTTTctctcttcatcatcatcactctCCTCTTTGCGATATCTGccaaGAGAAGCGAGCCTATGTATTTTGCCAAGAGGACAGAGCAATATTGTGCATAGAATGTGACCCTTCTATACACAAAACCAATGAACACACTCAGAAGCATAATAGGTTCCTTCTCACAGGTGTGAAGCTCTCTGCTTCCGCCATTAATGACACAAAGAGATCATCAGTTTCTAATGAAATTGTGAATGGAAGTAATGTTGAAGATTATTACTACATGGTGAGTGATCATAGTTCAGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAGAAGATTCCTGGTTATTGCTTTGAAGACCTTCTTGATGCTTCTTTCCCACCAACAACACCTAATGGAGGATTAGTTTGTGATGATAATACCCTGCCTGACCGCGATAGATAA 558 0.4068 MKIECDVCEKEEATIFCPSDEAALCDGCDRTIHNANKLSRNHPRFSLHHHHSPLCDICQEKRAYVFCQEDRAILCIECDPSIHKTNEHTQKHNRFLLTGVKLSASAINDTKRSSVSNEIVNGSNVEDYYYMVSDHSSVSTSSISEYLIEKIPGYCFEDLLDASFPPTTPNGGLVCDDNTLPDRDR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0788 185 ProSiteProfiles Zinc finger B-box type profile. 1 54 IPR000315 GO:0008270
Sto2g0788 185 SMART bboxneu5 5 47 IPR000315 GO:0008270
Sto2g0788 185 SMART bboxneu5 50 97 IPR000315 GO:0008270
Sto2g0788 185 Gene3D Classic Zinc Finger 1 97 - -
Sto2g0788 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 114 165 - -
Sto2g0788 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 118 - -
Sto2g0788 185 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 118 - -
Sto2g0788 185 PANTHER B-BOX ZINC FINGER PROTEIN 20 114 165 - -
Sto2g0788 185 CDD Bbox1_BBX-like 5 47 - -
Sto2g0788 185 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Sto2g0788 185 Pfam B-box zinc finger 53 89 IPR000315 GO:0008270
Sto2g0788 185 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Sto2g0788 185 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0788 Sto-Chr2 6756038 6758598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0788 1 165 C2C2-CO-like Transcription Factor Family AT1G75540 47.000 7.69e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sto2g0788 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0788 - - mtr:MTR_3g117320 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0788 2 6756038 6758598 Sto2g0788 2 6756038 6758598 ECH
Sto2g0788 2 6756038 6758598 Sto6g3906 6 43285777 43286751 ECH
Sto2g0788 2 6756038 6758598 Sto11g1504 11 14256976 14257831 ECH