Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0784 ATGATGGCGGCGAAGAGGGAAGGTGAAGGAGTGGTAATAAGAGGCTCCACAAAGTGCCAAGAGTGTGGAAACCAAGCCAAGAGAGGTTGTTCCTTCATGAGATGTAGAACTTGCTGCAACAACAAAGGTTTTGAGTGTGAAACTCATGTCAAAAGCACTTGGGTTCCTGTGGATCATAGGAGGAAAATTCATCAAGATTTGACCCCTCAAAGGAAAAAACACAAAAATCCAGGCGAGGAATTGAAGTTTCCGGCTTCAATGAGCTTAACCGCGACGTTCCGGTGTGTCCGGGTTCGATCCATGGATGCTTTGGCGAATGAATATGCGTACCATACTTGTGTAAGTATAGGAGGGCATGTATTCAGTGGTCTTCTCTATGATCAAGGCCCGGATACTcgtggtggtggtagtggtggtggtggcagcaGCGATGGTGATGATAGTTATAATGATTCGggtcttcctcttcctcttcctcagcaaaacaataataataatctcaTGAATATTGCATCAACAACACAAAACCATGATGGTGCAACTATGGCTTCATTAATCTCATCTAATTATGGTGGTGATAATTCTACTATTTTTTCTCCAACATATCCATTATTGCAATTTCCTCTCACTACCAACTTTATGCCTGGTATGCCATATTTCTCCCATCCCAAGCCTTGA 678 0.3791 MMAAKREGEGVVIRGSTKCQECGNQAKRGCSFMRCRTCCNNKGFECETHVKSTWVPVDHRRKIHQDLTPQRKKHKNPGEELKFPASMSLTATFRCVRVRSMDALANEYAYHTCVSIGGHVFSGLLYDQGPDTRGGGSGGGGSSDGDDSYNDSGLPLPLPQQNNNNNLMNIASTTQNHDGATMASLISSNYGGDNSTIFSPTYPLLQFPLTTNFMPGMPYFSHPKP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0784 225 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 182 IPR007818 GO:0003700|GO:0006355
Sto2g0784 225 MobiDBLite consensus disorder prediction 131 171 - -
Sto2g0784 225 Pfam Domain of unknown function (DUF702) 16 75 - -
Sto2g0784 225 Pfam Domain of unknown function (DUF702) 77 131 - -
Sto2g0784 225 PANTHER BNAC01G23660D PROTEIN 8 182 - -
Sto2g0784 225 MobiDBLite consensus disorder prediction 143 171 - -
Sto2g0784 225 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 18 59 IPR006510 -
Sto2g0784 225 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 82 130 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0784 Sto-Chr2 6705915 6706689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0784 19 142 C2H2 Transcription Factor Family AT5G66350 47.403 1.76e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sto2g0784 DUF702 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0784 - - gmx:102663693 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0784 2 6705915 6706689 Sto2g0784 2 6705915 6706689 ECH
Sto5g0175 5 1037615 1039630 Sto2g0784 2 6705915 6706689 ECH
Sto9g3668 9 35126485 35129316 Sto2g0784 2 6705915 6706689 ECH