Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0769 ATGGCTAAACCAAAGGCTCCAAGACGAACCCTAGACTCCTACACAGTCAAACACATTAACAAAACCGTAAGAGCCGGTGACTGCGTTCTAATGCGGCCTTCCGAGCCGTCTAAGCCGTCCTATGTGGCTAGGATCGAGCGGATCGAAGCTGACTCGCGAGGCGCCAACGTTAAGGTTCACGTCCGGTGGTACTACCGGCCGGAGGAGTCTATCGGCGGCCGTCGCCAGTTCCACGGTTCGAAGGAGGTTTTCCTCTCTGATCACTTCGATGTTCAGAGTGCAGACACGATCGAAGGGAAGTGTACGGTTCATAGTTTTAAGGGCTACACGAAGCTCGATGCTGTTGGAAACGACGATTTCTTCTGTCGCTTTGAATATAATTCCGCCACCGGAGCTTTCAATCCTGATAGAGTAGCTGTGTATGTTATTTCgttgttGTATTGTAAATGTGAGATGCCCTACAATCCTGATGACCTAATGGTCCAATGTGAAGCTTGTACTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAACTTGTTCTGCTGAAGATCCAAATAAGTTGCAAAATTCTCATTCTGCAGCGAGACTCTCAGATACAAAGGTGGATACAAAACGCCGTCGAAGGTGA 669 0.4768 MAKPKAPRRTLDSYTVKHINKTVRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYVISLLYCKCEMPYNPDDLMVQCEACTDWFHPACIDMTVEEAKRLDHFFCETCSAEDPNKLQNSHSAARLSDTKVDTKRRRR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0769 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 210 IPR013083 -
Sto2g0769 222 MobiDBLite consensus disorder prediction 198 222 - -
Sto2g0769 222 Pfam BAH domain 22 136 IPR001025 GO:0003682
Sto2g0769 222 PANTHER OS08G0421900 PROTEIN 1 222 - -
Sto2g0769 222 SMART PHD_3 147 194 IPR001965 -
Sto2g0769 222 Gene3D - 2 138 IPR043151 -
Sto2g0769 222 ProSitePatterns Zinc finger PHD-type signature. 148 193 IPR019786 -
Sto2g0769 222 SUPERFAMILY FYVE/PHD zinc finger 146 198 IPR011011 -
Sto2g0769 222 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 222 IPR045205 GO:0006325|GO:0035064
Sto2g0769 222 SMART BAH_4 21 137 IPR001025 GO:0003682
Sto2g0769 222 Pfam PHD-finger 147 195 IPR019787 -
Sto2g0769 222 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Sto2g0769 222 ProSiteProfiles Zinc finger PHD-type profile. 145 196 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0769 Sto-Chr2 6596339 6600194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0769 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 6.83e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto2g0769 BAH 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0769 - - gmx:100787968 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0769 2 6596339 6600194 Sto2g0769 2 6596339 6600194 ECH