Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0768 ATGGGGAAGAAGAAAGTGAAGGAAAGTGGGGGAAAAGAGCAATGCCCCTTGACTGTGTTCGTCTCCAACTTGCCCTATTCATTCACCAATTCCCAGCTGGAGGAGACTTTCAGTGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGGTCAGCCCAACATCGTGGTTTTGGTTATGTGCAATTTGCTGTTGAAGAAGATGCTAACCGTTCAATTGAGTTGAAGAATGGTTCATCTGTTGGAGGTCGAAAAATTGCAGTGAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCTCGACAATCAAAGTCAAATCAAGTGGATAAGACTGTTGACCTCCCAAAGTCAAAAAGTGATGACAATGAGGGTAGCATCTCGGGAGCAGAGAAGCCTGCTTCAGTCATTAAGGAAAAAGttttaaataaagaaaaaaattcaaggAAGCCTGCAGAAATGAAAAAATCAGCTCTTTGTAGTGATATAGCAGATGAGGGTGGTGGTTCCGAAAAGCAGAGggtTGCTAGAACTGTCATATTTGGTGGTCTCATCAATTCTGAAATGGCTGAAGCTGTTCACTGCCAAGCAAGGGAGATTGGCAGCGTGTGTTCTATAAAATACCCTCTTCCTAGGGAAGAATTTGAACAACATGGTAACTGCAATTTTACCTGTTCAGACTGGGATCCAATAGGTCTTCTGCAAGAAGGCTGTAAATTGGATGCTTCAGCTGTACTTTATACAAGTGTGAAATCAGCACGAGCTTCTGTTGCAATGTTGCATCAAAAAGACATTGGAGGAGGAACTGTTTGGGCACGACAGTTGGGTGGAGAGGGATCAAAGACTCAAAAATGGAAGCTTATTGTCAGAAATCTTCCTTTCcagGCCAAAGCAAATGAAGTAAGAAATATGTTTTTATCTGCAGGATTTGTATGGGATGTATTTATTCCACGCAAATCTGATACAGGTCTGTCAAAGGGTTTTGCATTTGTGAAATTCACATGCAAGCAAGATGCAGAAAATgcTATTCAGAAACTCAATGGATCAAAGTTTGGAAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAGAAGATATATAATAGTGATGCAAATGCTGCACTTGCTTTAGAAAATGGACAACAAAAGGTGAGAGATGAAAATGGTAGTAGTTCTGAGGATGATTTGGAGGATGATGTTGAGAATATAGGCAAACAGAACCATGACGGAGACGATGGTGATCAAGATGACTCCAATACCTCAGAGGAAGAAGGTGCTCCATCTGAAGTTAATTTTGATGAGGAAGTAGACATTGCAAGAAAGGTTCTTAATAACTTAATCACATCATCCACCAAAGGAACATCAGCAAATGATGATTCTATGTTATCCAAGAAAAACAAGGAGTCAAAATCCAATAAAAATGTTAATGAGgaagataaaaaattatctaaGGAGTTAGAAAATGTTAAAGATGTTTCTAAGCCTGAAGTCTCGGACAAAAGTAAAGTTCCGGATCTTAAGCAAACcgttgaagaaaaagaagatttgCAGAGAACAATTTTCATAAGTAATCTTCCCTTTGACTGCGATAATGAAGAAGTGAAGCAACGGTTCTCTGGATTTGGTGAAGTAGAATCCTTTTTCCCAGTCCTCCATCAAGTGACCAAGAGACCAAGAGGAACTGGTTTTCTTAAGTTCAAAACTGCAGATGCTGCTGATGCTGCAGTTTCTACAGCTAGTACTGCTTCCGGCTTGGGTATTTTTCTCAATGGTAGGCCATTAAAAGTCTTGAAGGCTTTAGATAAGAAATCAGCTCATGAAAAGGAAGTGGAGAAGGCTAAAAATGATAATCATGACCATCGCAATCTTTACCTTGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTCTCAGCCAGTGATATGTTAAAACGCCAGGAgttggaaaagaaaaagacaacAAAGCTCCAATCACCAAATTTTCATGTTTCAAGAACTAGACTCGTAATCTACAACTTACCAAAGTCAATGACCGAAAAAGTGCTCAAGAAGCTTTGCATTGATGCAGTTACCTCTAGAGCTACCAAGCAAAAACCCGAAATCCGGCAGATAAAGTTCTTGAAGGATGTAAAGAAAGGAAAGGTTGTGACGAAAAATCATTCGCGAGGAGTTGCCTTTGTTCAATTTTCAGAGCATCAGCATGCTCTTGTGGCTCTTAGAGTTCTTAACAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCGATCGTGGAGTTTGCCCTTGATAATGTTCAAACGCTGAAAATTCGGAATGCGAAGCTACAATTTCAGCAGCAGGCTGCTTCTCAAGGTGACAACAATGTCAAGGAAAACGAGGAACCCCACATTTCAGGTGTCCACTCCAATAAGAATGACAGAAAACGAAAATCTCGGGAGCACGGAAAACCAGTAAAGGACTCCTTGCTCAATAGAGAAGACGAATCAGAAAGCGCGCTGCCAAATGGAAATGCCATCCAAGAAGGCAATTCAAAAAGGCAGAAAGGCAACCGCAGAGGTAAAAAGCCAGAAGGGTTGTCACCGCGTAAAGAAAATTCAGAAACCTCGCCGAAGAAGCCGAGGAATTATCAAGATGGCAAGAATCGTGGTGGTCGTGGGACGCCAAACACCGATATCGAAACCAACAAAACTAAAATCGGTAAAAAAGTAGATAATGGATTGAAAAAGAGGAAGTTGCAGAATCAAGAAGATGGAGGGGAAAAAGTTGGAAAGAAACggttaaaaaagaataaagagcCTGTGGGGAAAGATGTGGTGGATAAGCTTGATATGCTTATAGAACAATATAAATCCAAGTACTCACAGAAGGGTTCACAAGGGAATGATGGTGAGAAAAAACCTTCCAAACAGCTTAGAAAATGGTTTGAAGCATAA 2943 0.3996 MGKKKVKESGGKEQCPLTVFVSNLPYSFTNSQLEETFSEVGPIRRCFMVMQKGSAQHRGFGYVQFAVEEDANRSIELKNGSSVGGRKIAVKHAMPRPPREARQSKSNQVDKTVDLPKSKSDDNEGSISGAEKPASVIKEKVLNKEKNSRKPAEMKKSALCSDIADEGGGSEKQRVARTVIFGGLINSEMAEAVHCQAREIGSVCSIKYPLPREEFEQHGNCNFTCSDWDPIGLLQEGCKLDASAVLYTSVKSARASVAMLHQKDIGGGTVWARQLGGEGSKTQKWKLIVRNLPFQAKANEVRNMFLSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLIAVDWAVPKKIYNSDANAALALENGQQKVRDENGSSSEDDLEDDVENIGKQNHDGDDGDQDDSNTSEEEGAPSEVNFDEEVDIARKVLNNLITSSTKGTSANDDSMLSKKNKESKSNKNVNEEDKKLSKELENVKDVSKPEVSDKSKVPDLKQTVEEKEDLQRTIFISNLPFDCDNEEVKQRFSGFGEVESFFPVLHQVTKRPRGTGFLKFKTADAADAAVSTASTASGLGIFLNGRPLKVLKALDKKSAHEKEVEKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELEKKKTTKLQSPNFHVSRTRLVIYNLPKSMTEKVLKKLCIDAVTSRATKQKPEIRQIKFLKDVKKGKVVTKNHSRGVAFVQFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKIRNAKLQFQQQAASQGDNNVKENEEPHISGVHSNKNDRKRKSREHGKPVKDSLLNREDESESALPNGNAIQEGNSKRQKGNRRGKKPEGLSPRKENSETSPKKPRNYQDGKNRGGRGTPNTDIETNKTKIGKKVDNGLKKRKLQNQEDGGEKVGKKRLKKNKEPVGKDVVDKLDMLIEQYKSKYSQKGSQGNDGEKKPSKQLRKWFEA 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0768 980 CDD RRM4_RBM28_like 670 767 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 856 882 - -
Sto2g0768 980 SUPERFAMILY RNA-binding domain, RBD 518 748 IPR035979 GO:0003676
Sto2g0768 980 MobiDBLite consensus disorder prediction 898 950 - -
Sto2g0768 980 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 578 IPR000504 GO:0003723
Sto2g0768 980 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 356 IPR000504 GO:0003723
Sto2g0768 980 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Sto2g0768 980 CDD RRM3_RBM28_like 518 599 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 461 509 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 137 157 - -
Sto2g0768 980 CDD RRM1_RBM28_like 18 96 - -
Sto2g0768 980 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 518 783 - -
Sto2g0768 980 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 7 513 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 450 509 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 415 431 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 93 126 - -
Sto2g0768 980 SUPERFAMILY RNA-binding domain, RBD 17 270 IPR035979 GO:0003676
Sto2g0768 980 MobiDBLite consensus disorder prediction 86 157 - -
Sto2g0768 980 Gene3D - 272 421 IPR012677 -
Sto2g0768 980 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 601 IPR000504 GO:0003723
Sto2g0768 980 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 670 778 IPR000504 GO:0003723
Sto2g0768 980 Coils Coil 472 492 - -
Sto2g0768 980 PANTHER RNA BINDING PROTEIN 518 783 - -
Sto2g0768 980 PANTHER RNA BINDING PROTEIN 7 513 - -
Sto2g0768 980 SMART rrm1_1 18 91 IPR000504 GO:0003723
Sto2g0768 980 SMART rrm1_1 286 359 IPR000504 GO:0003723
Sto2g0768 980 SMART rrm1_1 671 762 IPR000504 GO:0003723
Sto2g0768 980 SMART rrm1_1 519 597 IPR000504 GO:0003723
Sto2g0768 980 Gene3D - 669 764 IPR012677 -
Sto2g0768 980 Coils Coil 596 623 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 816 830 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 831 847 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 379 434 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 965 980 - -
Sto2g0768 980 MobiDBLite consensus disorder prediction 792 809 - -
Sto2g0768 980 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Sto2g0768 980 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Sto2g0768 980 MobiDBLite consensus disorder prediction 782 980 - -
Sto2g0768 980 Gene3D - 447 615 IPR012677 -
Sto2g0768 980 Gene3D - 2 109 IPR012677 -
Sto2g0768 980 SUPERFAMILY RNA-binding domain, RBD 281 366 IPR035979 GO:0003676
Sto2g0768 980 CDD RRM2_RBM28_like 286 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0768 Sto-Chr2 6583630 6592859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0768 18 97 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 2.18e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0768 K14573 - gmx:100794821 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0768 2 6583630 6592859 Sto2g0768 2 6583630 6592859 ECH