Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0766 ATGGAGTCGTCGCCGGCCAGTGGTATACTATCAGCTAAGCGCCCTTCAAGCGGGTTCGATTCAGAGAGACACAAAAGGCTGAAACTGTCGAGTTATAGCACACCATACTCAGCTTTTAAGAATGAAAAAGTTGAAGTTGAGACACATAAGAATTCTTCAAATGTTGTAGATTTTAGTAATCCATATGCTATCTCTGACTTGCTGGATAGTTTAAACAGTGGAAAATTTGGAAGTGTCACAAAGGAGATAGAGGCCCTTGTAAACCATAAAATGCGAATACTGAGCCCATACTTTGCTAAATATCCCATGCTTTTAAATCAATCAATGGAAGGGGCAATGCACGAAACTGATAAGGGGAAAACTCAGCAAGTTAATGGTTCGGCAGATAAAAGAGTCATAGATTTGGAGGAGGAAAACTTGGCAAAGGAACCACCAAAAGCTGTTGTAATCATTGATttagatgatgaagatgatataGATCAAGAGCCTTATCGACCATTTCAAGCAGTTGTACTTCCAAAACCCGCAGGCCAGGCTGCCACATTGGACTTAGTTGAATACCATGCTCCTAATGCACACTATCCTCCCATTGTGTACCATGCTGGAAGTATAGATATAAAACCTGATAAAAGTCTGGCTGGTAAAGATAGCAGTAGCACAGATAAAGGTGTTTATATTGGCGTACAAGAGGAAGACATTGATGATTCAAAGGATGATGGACTGGATGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGCTGTGAATTCTTTATCTGATGAAGAGGCAAAACAAGGTGAGGAGGACTGTGATCACTCTTTTGTTTTGAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGAGTTATTGACAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGTACAAGAACTTACATGGCTGATTCATGGAATGGCAAAGAGAGAGCAGCACCTGAGGTATCTGGACTTAAATTTGGTGATGAGCTGGTGGTAACTGATATCTCTGCGCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAGTGGAAggatttaattttcttgtcagAAACCTTGCAGGCGACAATCCCGGTGGCTGCATCTTGGCCCATGCTCCGGGATCTGGGAAGACATTCATGATAATCAGTTTTATGCAAAGTTTTCTGGGCAAGTATCCTAATGGCAGACCACTTGTGGTTCTTCCTAAGGGGATATTGGCGACCTGGAAAAAGGAGTTTCAAACATGGCAAGTCGAGGACATACCACTGTTTGATTTTTATTCTGCGAAGGCAGACAGTCGAGCTCAGCAACTGGAAGTATTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAGCAATTCTCGTCAATTGTCTGTGATTCTGGAACTAGCAATACATCAATTTCTTGCCAAGAGATACTACTTAAGGCTCCTTCAATTCTTATTTTAGATGAGGGGCACACGCCAAGGAATGACAATACTGACATGGTTCAGTCCCTTGCCAAAGTGCAAACTCCTCGAAAAGTTGTATTGTCAGGAACCCTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACCTTGTGCGGCCGAAGTTCTTACGTTCAGAAACTGCTCGGCCTATTGTCAATCGCATTAAGAGTAGAGTACATGTACCGGGTGTGAAAAAATTCCATGACTTAGTTGAGAACACTTTACAGAAGGATGCCGATTTTAAAAGGAAAGTGGCTGTTATTCAAGATTTGAGGGAGATGACCAGCAAGGTGCTTCATTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACAGTTATACTCAAGCTTACCCCTCAACAAAAGCGTGAAGCTCAAAAACTGAAGCACTTATATAGAAAGTTTAAGATGAGTTCTGTAGGGAGTGCCATTTATCTTCACCCTGCACTAAGACCTATGGCAGAAAACTGTAATGATAATGCTGCTGTATCTGATTATATAATGGATGAGAAAATAAAGAGTATAGATGTGGAAGAGGGGGTGAAGACAAAATTCTTTCTTAAAATGCTGAACCTTTGTGACTCGGGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTTTGAAGTATTTAGAAAGATTAGTTGTGACAAAAAGGGGATGGAGTCttggaaaagaaatttttgtcATTTCAGGAGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCTCCGGATGCCAAAGTCTTTTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCATCACGCATAATTATTTTGGATGTTCATCTAAATCCGTCTGTGACTCGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACCAAGAAAGTCTTTGCATATCGATTGGTTGCTGCTGATTGTCCCGAAGAAGATGATCACGATACTTGTTTCAAGAAGGAATTAATTTCAAGAATGTGGTTTGAATGGAACGAGTATTGTGGTTTTCATGATTTTGAAGTGGAAACCGTTGATGCGAAACAATCTGGTGATCTCTTTCTAGAAACTCCATTAAGTGAAGACATAAAAGTTCTCTATAAAAGGCCTTGGCATTCTAGTGGGATTGATTAA 2685 0.3978 MESSPASGILSAKRPSSGFDSERHKRLKLSSYSTPYSAFKNEKVEVETHKNSSNVVDFSNPYAISDLLDSLNSGKFGSVTKEIEALVNHKMRILSPYFAKYPMLLNQSMEGAMHETDKGKTQQVNGSADKRVIDLEEENLAKEPPKAVVIIDLDDEDDIDQEPYRPFQAVVLPKPAGQAATLDLVEYHAPNAHYPPIVYHAGSIDIKPDKSLAGKDSSSTDKGVYIGVQEEDIDDSKDDGLDDIWREMSMAIECSKDVAVNSLSDEEAKQGEEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNGKERAAPEVSGLKFGDELVVTDISAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNGRPLVVLPKGILATWKKEFQTWQVEDIPLFDFYSAKADSRAQQLEVLKQWVEQKSILFLGYKQFSSIVCDSGTSNTSISCQEILLKAPSILILDEGHTPRNDNTDMVQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRSETARPIVNRIKSRVHVPGVKKFHDLVENTLQKDADFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVILKLTPQQKREAQKLKHLYRKFKMSSVGSAIYLHPALRPMAENCNDNAAVSDYIMDEKIKSIDVEEGVKTKFFLKMLNLCDSGGEKLLVFSQYLLPLKYLERLVVTKRGWSLGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADCPEEDDHDTCFKKELISRMWFEWNEYCGFHDFEVETVDAKQSGDLFLETPLSEDIKVLYKRPWHSSGID 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0766 894 Pfam Helicase conserved C-terminal domain 704 810 IPR001650 -
Sto2g0766 894 Gene3D - 327 584 IPR038718 -
Sto2g0766 894 PANTHER PROTEIN CHROMATIN REMODELING 35 19 886 - -
Sto2g0766 894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 860 IPR001650 -
Sto2g0766 894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 369 548 IPR014001 -
Sto2g0766 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 555 IPR027417 -
Sto2g0766 894 SMART ultradead3 351 561 IPR014001 -
Sto2g0766 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 849 IPR027417 -
Sto2g0766 894 MobiDBLite consensus disorder prediction 1 24 - -
Sto2g0766 894 CDD SF2_C_SNF 694 822 - -
Sto2g0766 894 Gene3D - 618 872 IPR027417 -
Sto2g0766 894 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 886 IPR044567 GO:0080188
Sto2g0766 894 Pfam SNF2-related domain 375 635 IPR000330 GO:0005524|GO:0140658
Sto2g0766 894 SMART helicmild6 723 811 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0766 Sto-Chr2 6556691 6561801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0766 594 829 RAD5 or RAD16-like Gene Family AT5G43530 30.579 4.35e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto2g0766 SNF2_N 2.2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0766 K10875 - gmx:100780454 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0766 2 6556691 6561801 Sto2g0766 2 6556691 6561801 ECH