Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0711 ATGGCGTCCGCAGAAATTGAATACCGATGCTTTGTTGGTGGGCTCGCATGGGCCACCGACAACGATGCTCTCGAGAAAGCCTTCTCCCCCTTCGGCGAGATCATCGAATCGAAGGTGATCAACGATCGTGAGACTGGAAGGTCGAGAGGTTTCGGATTCGTGACCTTCTCCTCTGAACAGGCTATGAGGGACGCGATCGAGGGAATGAACGGTCAGGATCTTGATGGCCGGGTGGCGGTGCTTCCGATGGAAGCTGGAGGAGCTAGATTTAGCGTTTAG 279 0.5484 MASAEIEYRCFVGGLAWATDNDALEKAFSPFGEIIESKVINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRVAVLPMEAGGARFSV 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0711 92 Gene3D - 3 82 IPR012677 -
Sto2g0711 92 SUPERFAMILY RNA-binding domain, RBD 8 79 IPR035979 GO:0003676
Sto2g0711 92 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 78 IPR000504 GO:0003723
Sto2g0711 92 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 79 - -
Sto2g0711 92 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Sto2g0711 92 SMART rrm1_1 9 82 IPR000504 GO:0003723
Sto2g0711 92 PANTHER GEO13361P1-RELATED 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0711 Sto-Chr2 6093035 6093903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0711 11 67 C2H2 Transcription Factor Family AT2G19380 42.105 2.62e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0711 - K13195 fve:101299909 150.984