Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0655 ATGGAGAGAAAGGGAGGAGAACGTGCCTCTACTTCAGGAGAAGGTGAAGGAAGAAGGGAGGTGGTGGCTGCGACGGCGGCGGAGTCTGAGGTGGCGATGAGCATTCCAGATAATTTCCTGAGAAAATTTGGTGGTGAGCTTTCTACGGTTGCTACCATCACTGTTCCCGATGGCAGTGTCTGGCGCATAGGATTGAAAAGATTGGGCAACAAATTTTGGCTCCTTGATGGTTGGCAGGAATTTGTTCAACGCTACTCCATTGTCGTTGGATATGTTTTGGTATTCAGATATGAAGGGAAATCATCATTTACTGTTCATATTTTCAATTTGGCTACTTCCGAGATAAATTACCAATCAAATGCTCGTAACCATAATGAAGGGACTTACTTTGCAAATCAACATCttaaatttgatgaaattgAAGACGAAGACTACTTTGAATTCTTGGATTCATCACCTTCATCCATTACTCCTGGTGTTTTGCAAAACAAAGGGTTTACCGGATCTGTGGATCAATTAACATCTGGCAAGAGTTATAACTCTCCAGCCTTGCAGAATTTGTTCAATGGGTCTAAACTTAACTGCGTTAATTGGGCCGATAGTGGGAGTGCCCTTTCTGCAAAGGGTGCCAATTCACAAGATAATCAGTCAAGCAAAAATATAGGTGTTCAGTTCAATGCAGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTTTTCTAATGAGGAAATGCAAAGAGTTAAAAAAACTACAAGAAAGAAGCGGAAAACGGAGACTAATGGACAGGAGTCCTCTCCTCAACATGAAGAGGAGGCAGAAATGCGGTATAGGTTTTACGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACggcagaagaaagagaaagggcaGTTAATTCAGCTAAAGCTTTCGAACCAGCTAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCCGAAAAGCATTTGAATGGGGTTTCGGGATTCATTAAACTTCAGATCTCTGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGCAGAGCAAAGCTAAGCCAAGGGTGGTTTGAATTTTCATTGGAAAACAATTTAGGCGAAGGCGATGTCTGTGTTTTTGAACTGCTTAGAACGAAGGATGTAGTGCTGAACGTCACCGTATTTCGTGTCATCGAGGATGCAGGATTGCTGAACCCTCCTATGCTTCAACAACCAAACACTTGTGTTGTAAATAGGTTGTTGAATCTAGCTGATGAGAAGCTGAGTCAAAATGCTACTCTTCCTGTTTCATATCATGATGTAGTTCTCccagtttga 1368 0.4086 MERKGGERASTSGEGEGRREVVAATAAESEVAMSIPDNFLRKFGGELSTVATITVPDGSVWRIGLKRLGNKFWLLDGWQEFVQRYSIVVGYVLVFRYEGKSSFTVHIFNLATSEINYQSNARNHNEGTYFANQHLKFDEIEDEDYFEFLDSSPSSITPGVLQNKGFTGSVDQLTSGKSYNSPALQNLFNGSKLNCVNWADSGSALSAKGANSQDNQSSKNIGVQFNAVEFKRSTEELKLRFSNEEMQRVKKTTRKKRKTETNGQESSPQHEEEAEMRYRFYESASARKRTVTAEERERAVNSAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRTKDVVLNVTVFRVIEDAGLLNPPMLQQPNTCVVNRLLNLADEKLSQNATLPVSYHDVVLPV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0655 455 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Sto2g0655 455 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 33 431 - -
Sto2g0655 455 MobiDBLite consensus disorder prediction 1 20 - -
Sto2g0655 455 ProSiteProfiles B3 DNA-binding domain profile. 313 408 IPR003340 GO:0003677
Sto2g0655 455 MobiDBLite consensus disorder prediction 1 15 - -
Sto2g0655 455 Gene3D - 290 410 IPR015300 -
Sto2g0655 455 MobiDBLite consensus disorder prediction 258 274 - -
Sto2g0655 455 Gene3D - 20 111 IPR015300 -
Sto2g0655 455 MobiDBLite consensus disorder prediction 246 274 - -
Sto2g0655 455 SUPERFAMILY DNA-binding pseudobarrel domain 306 406 IPR015300 -
Sto2g0655 455 Pfam B3 DNA binding domain 31 109 IPR003340 GO:0003677
Sto2g0655 455 Pfam B3 DNA binding domain 316 406 IPR003340 GO:0003677
Sto2g0655 455 PANTHER B3 DOMAIN-CONTAINING 33 431 - -
Sto2g0655 455 CDD B3_DNA 33 109 IPR003340 GO:0003677
Sto2g0655 455 SMART B3_2 21 111 IPR003340 GO:0003677
Sto2g0655 455 SMART B3_2 313 408 IPR003340 GO:0003677
Sto2g0655 455 CDD B3_DNA 311 406 IPR003340 GO:0003677
Sto2g0655 455 SUPERFAMILY DNA-binding pseudobarrel domain 32 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0655 Sto-Chr2 5551246 5555432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0655 30 412 B3 DNA Binding Superfamily AT3G18990 50.259 1.29e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto2g0655 B3 2.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0655 - - gmx:100813285 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0655 2 5551246 5555432 Sto2g0655 2 5551246 5555432 ECH