Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0618 atGGCTCAGCCTACCAACAGCGCCGATCTGAATCAGCACCAGCACCAGCAGCAGTGGACGCAGCAGCCGCATCAGTATCAGCAGCAATGGATGGCTATGCAGTATCCGGCTGCTGCTATGGCCATGATGCAGCAGCAGATGATGATGTATCCTCAGCATTACATGCCTTATGTCCACCATTATCCGCCTCCTCATCAACAGCAGCAGCAGCTCAAGTCTCAGCCGCAACCGCCGCCGCCGTCGCATCAGCAGTACCAGCAGCAGAAGCAAGGGTCCTCCGATGAGATCAGGACGATCTGGCTCGGCGACCTGCATCATTGGATGGGTGAGAATTATCTTCATAGCTGTTTTGCTCATACAGGCGAGGTTAAAATTGCTTCTCTTTTCAATCCCTGCCATCCTGACTATGAGAGGAACACATCAGTTGACCTGGCTCTCGACCCATCATTAGATAGTCATCTTGTAGCTGCTACAATTGACCTGAGCTTTCTACAGCTGGATAAGTTAAATTCTTCTAGTTTTTTCACTGTAGTTTTATCAGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAGGGATATGGTTTTGTTGAGTTTTATTCGCGTGCAACAGCTGAGAAAGTTTTGAATGGGTACAATGGTACTATGATGCCAAATACTGATCAACCATTTCGTCTGAATTGGGCCACATTCAGTGCGGGTGATAGGAGATCTGATGCTAGTACTGATCTCTCTATATTTGTTGGAGACTTGGCTGTAGATGTTACTGATGCTATGCTGCAGGAAACCTTTGCTAGCAGATTTACATCTGTTAAGGGAGCAAAAGTTGTAATTGATTCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGCTGATGAAAATGAGAGGACTAGGGCCATGACTGAGATGAATGGAGTTTATTGTTCAAGTAGGCCTATGCGAATAGGTGTTGCAACCCCAAAGAAATCCTATGGATATCAACAGCAATATTCTTCCCAAGTCGTGGTGTTAGCTAATGGACATTCATCCAATGGTGCTATTGCCCAAGGTTCCCAGCCTGAAGGAGACGCTAGTAACACAACTATTTTTGTTGGAGGGCTCGATTCTGATGTCAGTGATGAAGATCTCAGACAACCGTTTTTACAATTTGGTGAGGTTGTCTCTGTTAAGATACCAGTGGGAAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAAGAAGCAATTCAGGCATTGAATGGGACAGTAATCGGGAAGCAGACCGTGCGTCTTTCTTGGGGTCGCAGTCCTGGAAACAAACATTGGAGAACAGATTCCAATGGAGGTCATTATGGAAGCAATGGATATGCCACAAGACAAAACCAGGATATGAGTTCGAACCCTGCTGCTTCAGTTCAAGGAGCTTCCTCATAA 1434 0.454 MAQPTNSADLNQHQHQQQWTQQPHQYQQQWMAMQYPAAAMAMMQQQMMMYPQHYMPYVHHYPPPHQQQQQLKSQPQPPPPSHQQYQQQKQGSSDEIRTIWLGDLHHWMGENYLHSCFAHTGEVKIASLFNPCHPDYERNTSVDLALDPSLDSHLVAATIDLSFLQLDKLNSSSFFTVVLSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLNGYNGTMMPNTDQPFRLNWATFSAGDRRSDASTDLSIFVGDLAVDVTDAMLQETFASRFTSVKGAKVVIDSNTGRSKGYGFVRFADENERTRAMTEMNGVYCSSRPMRIGVATPKKSYGYQQQYSSQVVVLANGHSSNGAIAQGSQPEGDASNTTIFVGGLDSDVSDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGSNGYATRQNQDMSSNPAASVQGASS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0618 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 324 IPR000504 GO:0003723
Sto2g0618 477 MobiDBLite consensus disorder prediction 434 477 - -
Sto2g0618 477 SUPERFAMILY RNA-binding domain, RBD 176 234 IPR035979 GO:0003676
Sto2g0618 477 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 177 475 - -
Sto2g0618 477 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 18 124 - -
Sto2g0618 477 SUPERFAMILY RNA-binding domain, RBD 57 124 IPR035979 GO:0003676
Sto2g0618 477 CDD RRM2_SECp43_like 244 323 - -
Sto2g0618 477 CDD RRM1_SECp43_like 98 233 - -
Sto2g0618 477 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 124 - -
Sto2g0618 477 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 177 475 - -
Sto2g0618 477 Gene3D - 343 467 IPR012677 -
Sto2g0618 477 SUPERFAMILY RNA-binding domain, RBD 234 342 IPR035979 GO:0003676
Sto2g0618 477 MobiDBLite consensus disorder prediction 60 92 - -
Sto2g0618 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 364 436 IPR000504 GO:0003723
Sto2g0618 477 Gene3D - 237 338 IPR012677 -
Sto2g0618 477 Gene3D - 54 140 IPR012677 -
Sto2g0618 477 Gene3D - 166 236 IPR012677 -
Sto2g0618 477 MobiDBLite consensus disorder prediction 1 21 - -
Sto2g0618 477 CDD RRM3_NGR1_NAM8_like 363 434 - -
Sto2g0618 477 SUPERFAMILY RNA-binding domain, RBD 355 458 IPR035979 GO:0003676
Sto2g0618 477 SMART rrm1_1 246 320 IPR000504 GO:0003723
Sto2g0618 477 SMART rrm1_1 365 432 IPR000504 GO:0003723
Sto2g0618 477 SMART rrm1_1 98 228 IPR000504 GO:0003723
Sto2g0618 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 221 IPR000504 GO:0003723
Sto2g0618 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 429 IPR000504 GO:0003723
Sto2g0618 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 316 IPR000504 GO:0003723
Sto2g0618 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0618 Sto-Chr2 5248231 5253085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0618 223 440 Eukaryotic Initiation Factors Gene Family AT1G34140 25.112 7.34e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0618 - - gmx:100798089 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0618 2 5248231 5253085 Sto2g0618 2 5248231 5253085 ECH