Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0605 atgtCTAATCAAGAACAAGATCCAAACATGACTCCATGGCCTCTCTTCGATTTCGATGATGACACCTTGCAGAAATCCGGCATCAACCCTAATTGTTccaataataatgaaattattgatagtGACTCCTTCCTTCAACTTCTTGATTTTGACAATATTATCGATGATGTCGAGCCAATCAAGGAAGGAGAGCCAGAGGCagaaggtggtggtggtggtggtggtgacaACACGACCACAACTACGAGGAGAAGCCGAGGAAAGAGGAGTATGAGTAGTGCAAGTGGGAATGAAGAAGCTGGGAATAAGAAGATGAAGTTTGTTAATAAAGAaggtggtgatgatgatgatgtgcatGAAATTCACATATTgactgagagagagagaaggaagaagatgaagaactATTTTACTGAACTTCATGCTTTGGTTCCTCACCTTCCTTCCAAGGTTGACAAAGCAACCATTCTTGAGGAAGCAGTGAAGTACATAAAAAATAAGGAATCCGAACTCCAAAAGCTTGAAAAACGAAAGGAGGAAAGGCTTCAACTCCAACAAATTCAATCTGCTTCAACCACACTTGAGTCTCCCACTTCTCAGTGGCTTCAATATCCCTATGatcacaacaataataatattaatggcaACAACTTTGTGACCGCCGCCAATACTGAAAACgccattaataatattattggaacttcctctaataataataataataataatgtgaatTACAATAATAGCCTTGCAGTAGGATTTCACACATGGTCTTATCCAAATGTTGTGGTGAACACATTTGGTGAAATGGCTCAGTTCTGTGTGTTATATCCCAAGAACCTTCGCCTCTACACTACTATCGCCTATGTGCTTGACAAGTACAAGATCGAGATAAATGGAGGTACAAATCAGTTTTCGAATGGATATTCAGTGGGGGAAATATTCAAGCAAGCAGCAGAAGAAATTGCAATGTGGACATCTTAA 984 0.3272 MSNQEQDPNMTPWPLFDFDDDTLQKSGINPNCSNNNEIIDSDSFLQLLDFDNIIDDVEPIKEGEPEAEGGGGGGGDNTTTTTRRSRGKRSMSSASGNEEAGNKKMKFVNKEGGDDDDVHEIHILTERERRKKMKNYFTELHALVPHLPSKVDKATILEEAVKYIKNKESELQKLEKRKEERLQLQQIQSASTTLESPTSQWLQYPYDHNNNNINGNNFVTAANTENAINNIIGTSSNNNNNNNVNYNNSLAVGFHTWSYPNVVVNTFGEMAQFCVLYPKNLRLYTTIAYVLDKYKIEINGGTNQFSNGYSVGEIFKQAAEEIAMWTS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0605 327 SMART finulus 123 173 IPR011598 GO:0046983
Sto2g0605 327 Coils Coil 157 184 - -
Sto2g0605 327 PANTHER - 85 325 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sto2g0605 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 180 IPR036638 GO:0046983
Sto2g0605 327 Pfam Helix-loop-helix DNA-binding domain 122 166 IPR011598 GO:0046983
Sto2g0605 327 CDD bHLH_AtbHLH_like 122 175 IPR045239 -
Sto2g0605 327 Gene3D - 112 196 IPR036638 GO:0046983
Sto2g0605 327 PANTHER TRANSCRIPTION FACTOR BHLH95 85 325 - -
Sto2g0605 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 167 IPR011598 GO:0046983
Sto2g0605 327 MobiDBLite consensus disorder prediction 74 99 - -
Sto2g0605 327 MobiDBLite consensus disorder prediction 62 113 - -
Sto2g0605 327 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0605 Sto-Chr2 5130122 5132775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0605 101 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.959 2.11e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto2g0605 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0605 - - vvi:100264010 137.502