Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0603 ATGTTCTCTCGTCACaacccctcctcctcctccttctcgcCGCCCTCTCTCACCCGCGACCAAGAACTCTCCGTCATCGTCGCCGCCCTCACCCACGTCGCCGGCTCCACCCCCGAAATTTGCCGCCAAAatggagagaagaagaagaggaagaggaagtaCAGGGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCCGCGGAGATCCGAGACCCGAGACGGGCGACCCGGGTCTGGCTGGGCACGTTCAATACGGCAGAGGAAGCGGCTCTGGCCTACGATAAGGCCGCTGTAGAATTCCGTGGGCCCCGCGCGAGGCTCAATTTCCCTCTCTCAGATACCTCGCTGCTGAACTCGCCAGCGGCGGCGGAACAGGGGAATAGCGGTGTGAATCCAAACGCGGGAATGGAAGAGGCGGTGTTTGGGGATAGTAGTGAGGATAGTGAGTTCTGGAAATGGATTGGAGAATTAGCTGATATGGAGCAGTTCGTGATGATGGATTTTGATGCTGCAAATTCTTCTTCGGACCCTGCTAGTGATGCTACACCAACAACTCAGACCCTCAGGTATTAG 573 0.5236 MFSRHNPSSSSFSPPSLTRDQELSVIVAALTHVAGSTPEICRQNGEKKKRKRKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAALAYDKAAVEFRGPRARLNFPLSDTSLLNSPAAAEQGNSGVNPNAGMEEAVFGDSSEDSEFWKWIGELADMEQFVMMDFDAANSSSDPASDATPTTQTLRY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0603 190 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Sto2g0603 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 46 149 - -
Sto2g0603 190 MobiDBLite consensus disorder prediction 171 190 - -
Sto2g0603 190 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Sto2g0603 190 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Sto2g0603 190 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Sto2g0603 190 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Sto2g0603 190 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Sto2g0603 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 46 149 - -
Sto2g0603 190 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Sto2g0603 190 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0603 Sto-Chr2 5120508 5121401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0603 50 124 AP2-EREBP Transcription Factor Family AT2G33710 70.886 1.14e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto2g0603 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto2g0603 - - ccaj:109799734 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0603 2 5120508 5121401 Sto2g0603 2 5120508 5121401 ECH
Sto2g0603 2 5120508 5121401 Sto10g0247 10 2042226 2043158 ECH